User contributions for Tgibbons
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2 February 2010
- 23:1923:19, 2 February 2010 diff hist +1,160 Cbcb:Pop-Lab:Ted-Report →UMIACS Resources: Creating a new entry for this week. Saving my work half way through.
- 23:0123:01, 2 February 2010 diff hist +218 Cbcb:Pop-Lab:Ted-Report →Other Observations About the Assemblies: Noted a blunder
26 January 2010
- 13:4513:45, 26 January 2010 diff hist 0 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added data for the 16 million read assembly
- 05:4805:48, 26 January 2010 diff hist +5 m Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis
- 05:4305:43, 26 January 2010 diff hist 0 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Tweaked the mem model for the overlapper
- 05:4205:42, 26 January 2010 diff hist +505 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Continued tweeking the tables and adding more data
- 04:4404:44, 26 January 2010 diff hist +178 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added more data and models for the minimus assemblies on walnut
25 January 2010
- 22:4422:44, 25 January 2010 diff hist +2 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added overlapper performance for 8M reads on walnut
- 18:4018:40, 25 January 2010 diff hist +1 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added tigger performance for 2M reads on walnut
- 18:1518:15, 25 January 2010 diff hist +3 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added overlapper performance for 4M reads on walnut
- 17:2717:27, 25 January 2010 diff hist +705 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added performance table for minimus on walnut
- 16:5916:59, 25 January 2010 diff hist −2,107 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Deleted all the info that I'd compiled into the minimus performance table
- 16:0616:06, 25 January 2010 diff hist +2 Cbcb:Pop-Lab:Ted-Report →UMIACS Resources: made this a sub-heading under this week's entry
- 16:0516:05, 25 January 2010 diff hist +691 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added an updated, accurate subset of the resources page
- 00:1000:10, 25 January 2010 diff hist +26 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Replaced carats with proper superscripts
- 00:0600:06, 25 January 2010 diff hist +147 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added better models derived using openoffice
24 January 2010
- 18:5418:54, 24 January 2010 diff hist +31 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Corrected some statements I'd made based on faulty late-night math
- 18:1318:13, 24 January 2010 diff hist 0 m Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis
- 18:1318:13, 24 January 2010 diff hist −101 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added data for the 8 million read assembly
- 18:1018:10, 24 January 2010 diff hist +105 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added data for the 8 million read assembly
- 18:0518:05, 24 January 2010 diff hist +1 m Cbcb:Pop-Lab:Ted-Report →January 29, 2010
- 18:0518:05, 24 January 2010 diff hist +893 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis
- 18:0218:02, 24 January 2010 diff hist −734 Cbcb:Pop-Lab:Ted-Report →Run Time Analysis
- 18:0218:02, 24 January 2010 diff hist +251 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis: Added a lousy model for the run time of the minimus contigger
- 17:5217:52, 24 January 2010 diff hist +38 Cbcb:Pop-Lab:Ted-Report →Minimus Performance Analysis
- 17:5117:51, 24 January 2010 diff hist +38 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added informative sub-heading. I'm thinking about making that a thing this year.
- 17:5017:50, 24 January 2010 diff hist +1,036 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Finally added the table
- 17:1617:16, 24 January 2010 diff hist +1,508 Cbcb:Pop-Lab:Ted-Report →January 22, 2010: fin.
- 16:3916:39, 24 January 2010 diff hist +8 Cbcb:Pop-Lab:Ted-Report →Minimus Documentation
- 16:1216:12, 24 January 2010 diff hist +3,857 Cbcb:Pop-Lab:Ted-Report →January 15, 2010: Added a post for Jan 22. Not done yet, but need food badly or will die. bbl
- 15:3815:38, 24 January 2010 diff hist +68 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added data for the 4 million & million read runs
- 07:0907:09, 24 January 2010 diff hist +125 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added moar values
- 06:4906:49, 24 January 2010 diff hist +230 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Fixed the models I was using to estimate minimus run time
- 06:3606:36, 24 January 2010 diff hist +735 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added some general notes about the minimus assemblies
- 06:1806:18, 24 January 2010 diff hist +11 Cbcb:Pop-Lab:Ted-Report →January 29, 2010
- 06:0906:09, 24 January 2010 diff hist +120 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Partially updated with information about the 20 million read minimus assembly
23 January 2010
- 23:2323:23, 23 January 2010 diff hist +799 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added more data, plus a couple of questionable models for the minimus run time
- 22:0822:08, 23 January 2010 diff hist −14 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Updated some values
- 22:0122:01, 23 January 2010 diff hist +20 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Updated some values
- 21:2321:23, 23 January 2010 diff hist +634 Cbcb:Pop-Lab:Ted-Report →January 29, 2010: Added more data. I really need to put this in a table.
- 20:5720:57, 23 January 2010 diff hist +394 Cbcb:Pop-Lab:Ted-Report →January 15, 2010: Started an entry for week ending Jan 29, 2010
22 January 2010
- 23:1323:13, 22 January 2010 diff hist −2 m Cbcb:Pop-Lab:How do I run the new Bambus No edit summary current
21 January 2010
- 02:4302:43, 21 January 2010 diff hist 0 m Cbcb:Pop-Lab:How do I run the new Bambus No edit summary
20 January 2010
- 21:2421:24, 20 January 2010 diff hist 0 m Cbcb:Pop-Lab:How do I run the new Bambus No edit summary
- 16:4316:43, 20 January 2010 diff hist −51 Cbcb:Pop-Lab:How-to Redirected the "getting started in CBCB" link to the page I created current
- 16:3816:38, 20 January 2010 diff hist −1 m Cbcb:Pop-Lab:Challenges No edit summary current
19 January 2010
- 17:1317:13, 19 January 2010 diff hist +492 Getting Started in CBCB →Configuring Your Home Directory and Shell: Added config instructions for .bash_profile
- 16:4816:48, 19 January 2010 diff hist +803 Getting Started in CBCB →Configuring Your Home Directory and Shell: Replaced my email address with actual instructions for configuring a fresh bashrc file
14 January 2010
- 19:4219:42, 14 January 2010 diff hist −10 m Cbcb:Pop-Lab:Ted-Report →Minimus Documentation
- 18:3418:34, 14 January 2010 diff hist +93 Cbcb:Pop-Lab:Ted-Report →Minimus Documentation: Added some commands for running minimus