User contributions for Tgibbons

10 August 2010

• 01:1701:17, 10 August 2010 diff hist +11‎ User:Tgibbons:Project-Ideas ‎ →‎Potential Research Projects Inspired by ''Microbial Inhabitants of Humans'': Reformatted the headers for each project
• 01:1501:15, 10 August 2010 diff hist +55‎ User:Tgibbons ‎ Added link to my project ideas page current

9 August 2010

• 17:4717:47, 9 August 2010 diff hist +1,225‎ User:Tgibbons:Project-Ideas ‎ →‎(pre)Binning to improve metagenomic assembly: Added more to the prebinning entry
• 17:3217:32, 9 August 2010 diff hist +2,504‎ User:Tgibbons:Project-Ideas ‎ →‎Other Potential Research Projects: Added a bunch of stuff about the prebinning project with Arthur
• 16:0816:08, 9 August 2010 diff hist +207‎ User:Tgibbons:Project-Ideas ‎ →‎Other Potential Research Projects
• 15:5515:55, 9 August 2010 diff hist +2‎ m Cbcb:Pop-Lab:Ted-Report ‎ →‎Other Potential Research Projects
• 15:5415:54, 9 August 2010 diff hist +2‎ m Cbcb:Pop-Lab:Ted-Report ‎ →‎Possible Research Projects Inspired by ''Microbial Inhabitants of Humans''
• 15:5415:54, 9 August 2010 diff hist −1,061‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Possible Research Projects Inspired by ''Microbial Inhabitants of Humans'': Replaced with a link to a dedicated page I created for my project ideas
• 15:5315:53, 9 August 2010 diff hist −1,039‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Other Potential Research Projects: Replaced with link to new dedicated page for my project ideas
• 15:5115:51, 9 August 2010 diff hist +2,591‎ N User:Tgibbons:Project-Ideas ‎ Moved previous ideas from my progress report
• 15:2915:29, 9 August 2010 diff hist +1,226‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎August 13, 2010: Created a new entry with a subsection for my project ideas

27 July 2010

• 19:3419:34, 27 July 2010 diff hist +288‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎July 23, 2010: Addedentry for week ending July 30, 2010, and a section for metagenomics papers I should read when I'm done with this book

22 July 2010

• 18:2318:23, 22 July 2010 diff hist +738‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Potential Research Projects Inspired by ''Microbial Inhabitants of Humans''
• 17:1817:18, 22 July 2010 diff hist +528‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎July 23, 2010: Started section to brainstorm research projects I'd like to look into
• 04:1604:16, 22 July 2010 diff hist +206‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎July 23, 2010
• 03:1903:19, 22 July 2010 diff hist +59‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎July 23, 2010
• 03:0803:08, 22 July 2010 diff hist +1,729‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎July 23, 2010: Created entry

4 June 2010

• 18:5818:58, 4 June 2010 diff hist +98‎ m Communal Software ‎ →‎Introduction
• 18:5618:56, 4 June 2010 diff hist +2,498‎ N Communal Software ‎ Created page
• 18:1018:10, 4 June 2010 diff hist +23‎ Main Page ‎ →‎Getting started: Created and linked to communal software page

26 May 2010

• 21:5221:52, 26 May 2010 diff hist +57‎ m Cbcb:Pop-Lab:16S-pipeline 16S analysis pipeline (for Gates project) ‎ →‎Directory structure
• 21:3021:30, 26 May 2010 diff hist −54‎ Cbcb:Pop-Lab:16S-pipeline 16S analysis pipeline (for Gates project) ‎ →‎Directory structure: Fixed some indeces, but the file structure appears to already be slightly out of date.

5 April 2010

• 15:3215:32, 5 April 2010 diff hist +152‎ Main Page ‎ →‎Getting started: Added links to the recently created resources pages

29 March 2010

• 02:3702:37, 29 March 2010 diff hist +818‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎April 2, 2010: Added entry for week ending April 2
• 02:3002:30, 29 March 2010 diff hist +795‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎March 26, 2010: Finished my thoughts for the week

26 March 2010

• 20:2520:25, 26 March 2010 diff hist +932‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎February 19, 2010: created an entry for March 26

19 February 2010

• 19:5219:52, 19 February 2010 diff hist +99‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎February 19, 2010
• 17:4617:46, 19 February 2010 diff hist +793‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎February 5, 2010: Created entries for the next two weeks

3 February 2010

• 02:0902:09, 3 February 2010 diff hist +1,478‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Biomarker Assembly: Finished entry

2 February 2010

• 23:3723:37, 2 February 2010 diff hist +1,438‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎February 5, 2010: Part two. Still have more to write.
• 23:1923:19, 2 February 2010 diff hist +1,160‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎UMIACS Resources: Creating a new entry for this week. Saving my work half way through.
• 23:0123:01, 2 February 2010 diff hist +218‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Other Observations About the Assemblies: Noted a blunder

26 January 2010

• 13:4513:45, 26 January 2010 diff hist 0‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis: Added data for the 16 million read assembly
• 05:4805:48, 26 January 2010 diff hist +5‎ m Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis
• 05:4305:43, 26 January 2010 diff hist 0‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis: Tweaked the mem model for the overlapper
• 05:4205:42, 26 January 2010 diff hist +505‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis: Continued tweeking the tables and adding more data
• 04:4404:44, 26 January 2010 diff hist +178‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis: Added more data and models for the minimus assemblies on walnut

25 January 2010

• 22:4422:44, 25 January 2010 diff hist +2‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis: Added overlapper performance for 8M reads on walnut
• 18:4018:40, 25 January 2010 diff hist +1‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis: Added tigger performance for 2M reads on walnut
• 18:1518:15, 25 January 2010 diff hist +3‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis: Added overlapper performance for 4M reads on walnut
• 17:2717:27, 25 January 2010 diff hist +705‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis: Added performance table for minimus on walnut
• 16:5916:59, 25 January 2010 diff hist −2,107‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎January 29, 2010: Deleted all the info that I'd compiled into the minimus performance table
• 16:0616:06, 25 January 2010 diff hist +2‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎UMIACS Resources: made this a sub-heading under this week's entry
• 16:0516:05, 25 January 2010 diff hist +691‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎January 29, 2010: Added an updated, accurate subset of the resources page
• 00:1000:10, 25 January 2010 diff hist +26‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis: Replaced carats with proper superscripts
• 00:0600:06, 25 January 2010 diff hist +147‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis: Added better models derived using openoffice

24 January 2010

• 18:5418:54, 24 January 2010 diff hist +31‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis: Corrected some statements I'd made based on faulty late-night math
• 18:1318:13, 24 January 2010 diff hist 0‎ m Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis
• 18:1318:13, 24 January 2010 diff hist −101‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎January 29, 2010: Added data for the 8 million read assembly
• 18:1018:10, 24 January 2010 diff hist +105‎ Cbcb:Pop-Lab:Ted-Report ‎ →‎Minimus Performance Analysis: Added data for the 8 million read assembly