User:Dpuiu: Difference between revisions

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Daniela Puiu's page
Daniela Puiu's page


== NCBI: ==


* [http://www.ncbi.nlm.nih.gov/ NCBI]
* [http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi?cmd=browse&f=&m=main&s=browse AA]
* [http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=on&BLAST_PROGRAMS=megaBlast&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on BLAST]
* [http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi Microbial Genomes]
* [http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi? SRA]
* [ftp://ftp.ncbi.nih.gov/pub/TraceDB/ShortRead/ SRA FTP]
* [http://www.ncbi.nlm.nih.gov/Traces/trace.cgi? TA]
* [ftp://ftp.ncbi.nih.gov/pub/TraceDB/ TA FTP]


== Other links: ==
= NCBI =
 
* [http://www.ncbi.nlm.nih.gov/ NCBI] ; [http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi?cmd=browse&f=&m=main&s=browse AA] ; [http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=on&BLAST_PROGRAMS=megaBlast&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on BLAST] ; [http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi Microbial_Genomes] ; [http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi? SRA] [ftp://ftp.ncbi.nih.gov/pub/TraceDB/ShortRead/ SRA_FTP] ; [http://www.ncbi.nlm.nih.gov/Traces/trace.cgi? TA] ; [ftp://ftp.ncbi.nih.gov/pub/TraceDB/ TA_FTP] ; [ftp://ftp.ncbi.nih.gov/genomes/ Genomes_FTP] ; [ftp://ftp.ncbi.nih.gov/genomes/Bacteria Bacterial Genomes FTP] ; [http://www.ncbi.nlm.nih.gov/Taxonomy/CommonTree/wwwcmt.cgi Taxonomy CommonTree]
* [http://www.ncbi.nlm.nih.gov/genomes/genlist.cgi?taxid=2&type=0&name=Complete%20Bacteria Complete Bacteria]
 
= Links =


* [http://www.hgsc.bcm.tmc.edu/ Baylor]
* [http://www.hgsc.bcm.tmc.edu/ Baylor]
* [http://www.embl.org/ EMBL]
* [http://www.embl.org/ EMBL]
* [http://emboss.sourceforge.net/apps/#Overview EMBOSS]
* [http://emboss.sourceforge.net/apps/#Overview EMBOSS]
* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=search&term=homo%20sapiens Homo Sapiens Genome Projects]
* [http://genome.jgi-psf.org/mic_home.html JGI Microbial Genomes]
* [http://www.genomesonline.org/ JGI Genomes Online (GOLD)]
* [http://img.jgi.doe.gov/cgi-bin/pub/main.cgi JGI Integrated Microbial Genomes (IMG)]
* [http://www.sanger.ac.uk/ Sanger]
* [http://www.sanger.ac.uk/ Sanger]
* [http://www.sanger.ac.uk/Projects/Microbes/ Sanger Microbial Genomes]
* [http://www.sanger.ac.uk/Projects/Microbes/ Sanger Microbial Genomes]


* [http://www.thearkdb.org/arkdb/index.jsp ARKDB] genetic maps - cow, chicken ...


== Projects: ==
= Projects =
'''DHS genomes'''
* [[Bioterrorism|Bioterrorism]]
* [[Bacillus_anthracis|Bacillus anthracis]]
* [[Burkholderia_mallei|Burkholderia mallei]]
* [[Burkholderia_pseudomallei|Burkholderia pseudomallei]]
* [[Clostridium_botulinum|Clostridium botulinum]] (Hall strain A str. ATCC 3502) ; uploaded to Insignia ; (other) ; some uploaded to Insignia
* [[Clostridium_perfringens|Clostridium perfringens]] ; some uploaded to Insignia
* [[Cryptosporidium_hominis|Cryptosporidium hominis]] (test)
* [[Francisella_tularensis_holarctica_OSU18|Francisella tularensis OSU18]] in Insignia
* [[Francisella_tularensis|Francisella tularensis]] some uploaded to Insignia
* [[Salmonella|Salmonella]] (Washington Univ in St Louis)
* [[Yersinia_enterocolitica|Yersinia enterocolitica]]
* [[Yersinia_pestis|Yersinia pestis]]


<!--
* [https://wiki.umiacs.umd.edu/cbcb/index.php/Clostridium_botulinum  Clostridium botulinum]
'''Other genomes'''
* [https://wiki.umiacs.umd.edu/cbcb/index.php/Culex_pipiens_symbiont Culex pipiens symbiont]
* [[Bumblebee|Bombus impatiens]]
* [https://wiki.umiacs.umd.edu/cbcb/index.php/Francisella_tularensis Francisella tularensis]
* [[Brugia_malayi|Brugia malayi]]
* [[Bos_taurus|Bos taurus]] , [[Bos_taurus_redo|Bos taurus redo]] , [[Bos_taurus_3.0|Bos taurus 3.0]]
* [[dpuiu_cat|Cat]]
* [[Coffee_bacs|Coffee BACs]]
* [[Culex_pipiens_symbiont|Culex pipiens wolbachia symbiont]]
* [[Culex_pipiens_mitochondrion|Culex pipiens wolbachia mitochondrion]]
* [[Helicobacter_pylori|Helicobacter pylori]]
* [[Homo_sapiens|Homo sapiens]]
* [[Kalanchoe|Kalanchoe]]
* [[Megachile_rotundata|Megachile rotundata]]
* [[Methanobrevibacter_smithii|Methanobrevibacter smithii]]
* [[Pine_tree|Pine tree]]
* [[Pseudomonas_aeruginosa|Pseudomonas aeruginosa]]
* [[Pseudodomonas_syringae|Pseudomonas syringae]]
* [[Sea_urchin|Sea urchin]]
* [[Turkey|Turkey]]
* [[Xanthomonas_oryzae|Xanthomonas oryzae]] XOO
* [[Xanthomonas_campestris_pv_raphani|Xanthomonas campestris pv. raphani]] XCR
* [[Strawberry|Strawberry]]
* [[Ecoli_germany|Ecoli Germany]]
-->
 
= Other =
* [[Trace_formatting|Sequencing]]
* [[dpuiu_CA|CA]] ; [[Assembly_merge|Assembly]]
* [[Comparative_assemblies|Comparative assemblies]]
* [[Metagenoms|Metagenomics]]
* [[NCBI_submission|NCBI submission]]
* [[Repeat_search|Repeat search]]
* [[Vector_trimming|Vector trimming]]
* [[Data_formats|Data formats]]
<!--
* [[dpuiu_Assemblathon|Assemblathon]]
* [[dpuiu_HTS|HTS]]
* [[dpuiu_definitions|Definitions]]
* [[dpuiu_meeting_notes|Meeting notes]]
* [[dpuiu_articles|My articles]]
* [[dpuiu_CS|CS]] ; [[dpuiu_Perl|Perl]] ; [[dpuiu_C|C]] ; [[dpuiu_Linux|Linux]] ; [[dpuiu_DOS|DOS]] ; [[douiu_wiki|wiki]] ; [[dpuiu_thunderbird|thunderbird]]
* [[Pop_group_meeting|Pop group meeting]] (Monday 's 3pm)
* [[dpuiu_snp|Snp calling]]
* [[dpuiu_todo|ToDo]]
* [[dpuiu_JHU|JHU]]
-->

Latest revision as of 15:34, 27 December 2011

Daniela Puiu's page


NCBI

Links

  • ARKDB genetic maps - cow, chicken ...

Projects

DHS genomes


Other

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