User:Dpuiu

Daniela Puiu's page

NCBI

• NCBI ; AA ; BLAST ; Microbial_Genomes ; SRA SRA_FTP ; TA ; TA_FTP ; Genomes_FTP ; Bacterial Genomes FTP ; Taxonomy CommonTree
• Complete Bacteria

Links

• Baylor
• EMBL
• EMBOSS
• Homo Sapiens Genome Projects
• JGI Microbial Genomes
• JGI Genomes Online (GOLD)
• JGI Integrated Microbial Genomes (IMG)
• Sanger
• Sanger Microbial Genomes

• ARKDB genetic maps - cow, chicken ...

Projects

DHS genomes

• Bioterrorism
• Bacillus anthracis
• Burkholderia mallei
• Burkholderia pseudomallei
• Clostridium botulinum (Hall strain A str. ATCC 3502) ; uploaded to Insignia ; (other) ; some uploaded to Insignia
• Clostridium perfringens ; some uploaded to Insignia
• Cryptosporidium hominis (test)
• Francisella tularensis OSU18 in Insignia
• Francisella tularensis some uploaded to Insignia
• Salmonella (Washington Univ in St Louis)
• Yersinia enterocolitica
• Yersinia pestis

Other

• Sequencing
• CA ; Assembly
• Comparative assemblies
• Metagenomics
• NCBI submission
• Repeat search
• Vector trimming
• Data formats