Vector trimming: Difference between revisions

From Cbcb
Jump to navigation Jump to search
No edit summary
No edit summary
 
Line 1: Line 1:
Lucy
= Sofware =


* [http://sourceforge.net/projects/lucy/ lucy]
* [http://sourceforge.net/projects/lucy/ Lucy]
* Data sets
 
** Bacillus anthracis: no vector or clipping points
= Data sets =
 
== Bacillus anthracis ==
 
* No vector or clipping points
  57168 anc.bacillus_anthracis.001
 
* Files:
   /fs/szasmg3/dpuiu/VectorDiscovery/bacillus_anthracis
   /fs/szasmg3/dpuiu/VectorDiscovery/bacillus_anthracis
== Pseudomonas aeruginosa ==
* Some reads are missing vector trimming info
  491763 anc.pseudomonas_aeruginosa.001  # first 214715 miss CLIP_VECTOR_LEFT, CLIP_VECTOR_RIGHT;  CLIP_LEFT=0
  500002 anc.pseudomonas_aeruginosa.002
    56960 anc.pseudomonas_aeruginosa.003
  1048725 total
* Files:
  /fs/szasmg3/dpuiu/VectorDiscovery/pseudomonas_aeruginosa

Latest revision as of 19:55, 10 September 2009

Sofware

Data sets

Bacillus anthracis

  • No vector or clipping points
 57168 anc.bacillus_anthracis.001
  • Files:
 /fs/szasmg3/dpuiu/VectorDiscovery/bacillus_anthracis

Pseudomonas aeruginosa

  • Some reads are missing vector trimming info
  491763 anc.pseudomonas_aeruginosa.001  # first 214715 miss CLIP_VECTOR_LEFT, CLIP_VECTOR_RIGHT;  CLIP_LEFT=0
  500002 anc.pseudomonas_aeruginosa.002
   56960 anc.pseudomonas_aeruginosa.003
 1048725 total
  • Files:
 /fs/szasmg3/dpuiu/VectorDiscovery/pseudomonas_aeruginosa