CogNeuro - Revision history

Shohini at 17:35, 25 August 2022

2022-08-25T17:35:26Z

← Older revision		Revision as of 17:35, 25 August 2022
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	==Toolkits==		==Toolkits==
	*Eelbrain for EEG/MEG		*Eelbrain for EEG/MEG analysis (Python)
	**[https://eelbrain.readthedocs.io/en/stable/ Link]		**[https://eelbrain.readthedocs.io/en/stable/ Link]
	**[https://www.biorxiv.org/content/10.1101/2021.08.01.454687v1 Paper]		**[https://www.biorxiv.org/content/10.1101/2021.08.01.454687v1 Paper]
	**Tutorial TBD		**Tutorial TBD
	*SPM for fMRI analysis		*SPM for fMRI analysis (Matlab)
	**[https://andysbrainbook.readthedocs.io/en/latest/SPM/SPM_Overview.html SPM Analysis]; read Poldrack first!		**[https://andysbrainbook.readthedocs.io/en/latest/SPM/SPM_Overview.html SPM Analysis]; read Poldrack first!
	**[https://andysbrainbook.readthedocs.io/en/latest/PM/PM_Overview.html SPM Parametric Modulation]		**[https://andysbrainbook.readthedocs.io/en/latest/PM/PM_Overview.html SPM Parametric Modulation]
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	**[https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FSLeyes FSLeyes]		**[https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FSLeyes FSLeyes]
	**[https://ric.uthscsa.edu/mango/ Mango]		**[https://ric.uthscsa.edu/mango/ Mango]
	*Nilearn for fMRI		*Nilearn for fMRI (Python)
	**[https://nilearn.github.io/stable/glm/index.html#glm GLM analysis]		**[https://nilearn.github.io/stable/glm/index.html#glm GLM analysis]
	**[https://nilearn.github.io/stable/auto_examples/00_tutorials/plot_decoding_tutorial.html Decoding]		**[https://nilearn.github.io/stable/auto_examples/00_tutorials/plot_decoding_tutorial.html Decoding]

Shohini at 17:34, 25 August 2022

2022-08-25T17:34:37Z

← Older revision		Revision as of 17:34, 25 August 2022
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	This is a repository that is updated periodically with resources to analyze continuous, naturalistic neuroimaging data with computational tools. It is split into three sections:		This is a repository that is updated periodically with resources to analyze continuous, naturalistic neuroimaging data with computational tools. It is split into three sections:
	;Datasets: EEG/MEG~~/fMRI~~		;Datasets: Naturalistic fMRI/EEG/MEG
	;Toolkits & Tutorials :For neuroimaging data analysis		;Toolkits & Tutorials :For neuroimaging data analysis
	;Relevant Background:Selected papers, podcasts, talks, course videos, books		;Relevant Background:Selected papers, podcasts, talks, course videos, books
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	**[https://www.biorxiv.org/content/10.1101/2021.08.01.454687v1 Paper]		**[https://www.biorxiv.org/content/10.1101/2021.08.01.454687v1 Paper]
	**Tutorial TBD		**Tutorial TBD
	*SPM for fMRI		*SPM for fMRI analysis
	**[https://andysbrainbook.readthedocs.io/en/latest/SPM/SPM_Overview.html SPM Analysis]; read Poldrack first!		**[https://andysbrainbook.readthedocs.io/en/latest/SPM/SPM_Overview.html SPM Analysis]; read Poldrack first!
	**[https://andysbrainbook.readthedocs.io/en/latest/PM/PM_Overview.html SPM Parametric Modulation]		**[https://andysbrainbook.readthedocs.io/en/latest/PM/PM_Overview.html SPM Parametric Modulation]
	**[https://andysbrainbook.readthedocs.io/en/latest/Stats/Stats_Overview.html Stats for fMRI]		**[https://andysbrainbook.readthedocs.io/en/latest/Stats/Stats_Overview.html Stats for fMRI]
			*fMRI image viewer (for figures)
			**[https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FSLeyes FSLeyes]
			**[https://ric.uthscsa.edu/mango/ Mango]
	*Nilearn for fMRI		*Nilearn for fMRI
	**[https://nilearn.github.io/stable/glm/index.html#glm GLM analysis]		**[https://nilearn.github.io/stable/glm/index.html#glm GLM analysis]
	**[https://nilearn.github.io/stable/auto_examples/00_tutorials/plot_decoding_tutorial.html Decoding]		**[https://nilearn.github.io/stable/auto_examples/00_tutorials/plot_decoding_tutorial.html Decoding]
			**[https://nilearn.github.io/stable/plotting/index.html#plotting Plotting Brain Images]
			*Neuroscount
			**[https://neuroscout.org/ Link]
	*More: [https://www.nitrc.org/top/toplist.php?type=downloads NITRC]		*More: [https://www.nitrc.org/top/toplist.php?type=downloads NITRC]

Shohini at 17:27, 25 August 2022

2022-08-25T17:27:05Z

← Older revision		Revision as of 17:27, 25 August 2022
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	**[https://www.biorxiv.org/content/10.1101/2021.08.01.454687v1 Paper]		**[https://www.biorxiv.org/content/10.1101/2021.08.01.454687v1 Paper]
	**Tutorial TBD		**Tutorial TBD
			*SPM for fMRI
			**[https://andysbrainbook.readthedocs.io/en/latest/SPM/SPM_Overview.html SPM Analysis]; read Poldrack first!
			**[https://andysbrainbook.readthedocs.io/en/latest/PM/PM_Overview.html SPM Parametric Modulation]
			**[https://andysbrainbook.readthedocs.io/en/latest/Stats/Stats_Overview.html Stats for fMRI]
	*Nilearn for fMRI		*Nilearn for fMRI
	**[https://nilearn.github.io/stable/glm/index.html#glm GLM analysis]		**[https://nilearn.github.io/stable/glm/index.html#glm GLM analysis]
	**[https://nilearn.github.io/stable/auto_examples/00_tutorials/plot_decoding_tutorial.html Decoding]		**[https://nilearn.github.io/stable/auto_examples/00_tutorials/plot_decoding_tutorial.html Decoding]
	*SPM for fMRI
	**Link to tutorial
	*More: [https://www.nitrc.org/top/toplist.php?type=downloads NITRC]		*More: [https://www.nitrc.org/top/toplist.php?type=downloads NITRC]

Shohini at 17:17, 25 August 2022

2022-08-25T17:17:43Z

← Older revision		Revision as of 17:17, 25 August 2022
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	**[https://braininspired.co/podcast/144/ Brain Inspired 144: Emily Bender & Ev Federenko - Large Language Models]		**[https://braininspired.co/podcast/144/ Brain Inspired 144: Emily Bender & Ev Federenko - Large Language Models]
	*Talks:		*Talks:
	**[http://nancysbraintalks.mit.edu/video/nancys-ted-talk-neural-portrait-human-mind Nancy's Kanwisher's TED talk: A Neural Portrait of the Human Mind]		**[http://nancysbraintalks.mit.edu/video/nancys-ted-talk-neural-portrait-human-mind Nancy Kanwisher's TED talk: A Neural Portrait of the Human Mind]
	**[https://www.mpi.nl/events/neurobiology-language-key-issues-and-ways-forward/videos Jonathan Brennan: Building bridges between computation and implementation for natural language understanding]		**[https://www.mpi.nl/events/neurobiology-language-key-issues-and-ways-forward/videos Jonathan Brennan: Building bridges between computation and implementation for natural language understanding]
	**[https://www.youtube.com/watch?v=YxAlcQKsgJc Laura Gwilliams: Towards a mechanistic account of speech comprehension]		**[https://www.youtube.com/watch?v=YxAlcQKsgJc Laura Gwilliams: Towards a mechanistic account of speech comprehension]

Shohini at 17:16, 25 August 2022

2022-08-25T17:16:42Z

← Older revision		Revision as of 17:16, 25 August 2022
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	*MASC-MEG (English)		*MASC-MEG (English)
	**[https://osf.io/ag3kj/ Link]		**[https://osf.io/ag3kj/ Link]
	**[https://arxiv.org/abs/2208.11488 ~~Paper~~]		**[https://arxiv.org/abs/2208.11488 Preprint]
	*10 hour within-participant MEG narrative (English)		*10 hour within-participant MEG narrative (English)
	**[https://data.donders.ru.nl/collections/di/dccn/DSC_3011085.05_995?1 Link]		**[https://data.donders.ru.nl/collections/di/dccn/DSC_3011085.05_995?1 Link]

Shohini at 17:16, 25 August 2022

2022-08-25T17:16:21Z

← Older revision		Revision as of 17:16, 25 August 2022
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	*Mother of unification studies (MOUS) MEG/fMRI (Dutch)		*Mother of unification studies (MOUS) MEG/fMRI (Dutch)
	**[https://data.donders.ru.nl/collections/di/dccn/DSC_3011020.09_236?0 Link]		**[https://data.donders.ru.nl/collections/di/dccn/DSC_3011020.09_236?0 Link]
	**[https://www.nature.com/articles/s41597-019-0020-y]		**[https://www.nature.com/articles/s41597-019-0020-y Data paper]
	*LPP EEG (26 languages)		*LPP EEG (26 languages)
	**Data collection underway		**Data collection underway

Shohini at 17:15, 25 August 2022

2022-08-25T17:15:57Z

← Older revision		Revision as of 17:15, 25 August 2022
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	==Toolkits==		==Toolkits==
	*Eelbrain for EEG/MEG		*Eelbrain for EEG/MEG
	**Link		**[https://eelbrain.readthedocs.io/en/stable/ Link]
	**Paper		**[https://www.biorxiv.org/content/10.1101/2021.08.01.454687v1 Paper]
			**Tutorial TBD
	*Nilearn for fMRI		*Nilearn for fMRI
	**~~Link to~~ GLM ~~tutorial~~		**[https://nilearn.github.io/stable/glm/index.html#glm GLM analysis]
			**[https://nilearn.github.io/stable/auto_examples/00_tutorials/plot_decoding_tutorial.html Decoding]
	*SPM for fMRI		*SPM for fMRI
	**Link to tutorial		**Link to tutorial

Shohini at 17:13, 25 August 2022

2022-08-25T17:13:42Z

← Older revision		Revision as of 17:13, 25 August 2022
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	**[https://data.donders.ru.nl/collections/di/dccn/DSC_3011085.05_995?1 Link]		**[https://data.donders.ru.nl/collections/di/dccn/DSC_3011085.05_995?1 Link]
	**[https://www.nature.com/articles/s41597-022-01382-7 Data paper]		**[https://www.nature.com/articles/s41597-022-01382-7 Data paper]
	*Mother of unification studies (MOUS) MEG/fMRI		*Mother of unification studies (MOUS) MEG/fMRI (Dutch)
	**[https://data.donders.ru.nl/collections/di/dccn/DSC_3011020.09_236?0 Link]		**[https://data.donders.ru.nl/collections/di/dccn/DSC_3011020.09_236?0 Link]
	**[https://www.nature.com/articles/s41597-019-0020-y]		**[https://www.nature.com/articles/s41597-019-0020-y]
	*LPP EEG		*LPP EEG (26 languages)
	**Data collection underway		**Data collection underway
	**[https://aclanthology.org/2020.lincr-1.6/ Data paper]		**[https://aclanthology.org/2020.lincr-1.6/ Data paper]

Shohini: /* Datasets */

2022-08-25T17:12:16Z

Datasets

← Older revision		Revision as of 17:12, 25 August 2022
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	==Datasets==		==Datasets==
	*LPP-fMRI corpus (English, Chinese, French)		*LPP-fMRI corpus (English, Chinese, French)
	**Link		**[https://openneuro.org/datasets/ds003643/versions/2.0.1 Link]
	**Data paper		**[https://www.biorxiv.org/content/10.1101/2021.10.02.462875v1.abstract Preprint; Scientific Data paper in press]
	*Narratives fMRI corpus		*Narratives fMRI corpus (English)
	**[https://openneuro.org/datasets/ds002345/versions/1.1.4 Link]		**[https://openneuro.org/datasets/ds002345/versions/1.1.4 Link]
	**[https://www.nature.com/articles/s41597-021-01033-3? Data paper]		**[https://www.nature.com/articles/s41597-021-01033-3? Data paper]
	*NBD fMRI corpus		*NBD fMRI corpus (Dutch)
	**Link		**[https://osf.io/utpdy/ Link]
	**Data paper		**[http://lrec-conf.org/workshops/lrec2018/W9/pdf/book_of_proceedings.pdf#page=17 Data paper]
	*Alice fMRI (English)		*Alice fMRI (English)
	**[https://openneuro.org/datasets/ds002322/versions/1.0.4 Link to whole brain data]		**[https://openneuro.org/datasets/ds002322/versions/1.0.4 Link to whole brain data]
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	**[https://deepblue.lib.umich.edu/data/concern/data_sets/bg257f92t Link]		**[https://deepblue.lib.umich.edu/data/concern/data_sets/bg257f92t Link]
	**[https://aclanthology.org/2020.lrec-1.15/ Data paper]		**[https://aclanthology.org/2020.lrec-1.15/ Data paper]
	*Appleseed MEG		*Appleseed MEG (English)
	**[https://datadryad.org/stash/dataset/doi:10.5061/dryad.nvx0k6dv0 Link]		**[https://datadryad.org/stash/dataset/doi:10.5061/dryad.nvx0k6dv0 Link]
	**[https://elifesciences.org/articles/72056 Paper]		**[https://elifesciences.org/articles/72056 Paper]
	*MASC-MEG		*MASC-MEG (English)
	**Link		**[https://osf.io/ag3kj/ Link]
	**Paper		**[https://arxiv.org/abs/2208.11488 Paper]
	*~~MUC~~ MEG/fMRI		*10 hour within-participant MEG narrative (English)
	**Link		**[https://data.donders.ru.nl/collections/di/dccn/DSC_3011085.05_995?1 Link]
	**~~Paper~~		**[https://www.nature.com/articles/s41597-022-01382-7 Data paper]
			*Mother of unification studies (MOUS) MEG/fMRI
			**[https://data.donders.ru.nl/collections/di/dccn/DSC_3011020.09_236?0 Link]
			**[https://www.nature.com/articles/s41597-019-0020-y]
	*LPP EEG		*LPP EEG
	**~~Paper~~		**Data collection underway
			**[https://aclanthology.org/2020.lincr-1.6/ Data paper]

	==Toolkits==		==Toolkits==

Shohini: /* Datasets */

2022-08-25T16:52:21Z

Datasets

← Older revision		Revision as of 16:52, 25 August 2022
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	**Data paper		**Data paper
	*Narratives fMRI corpus		*Narratives fMRI corpus
	**Link		**[https://openneuro.org/datasets/ds002345/versions/1.1.4 Link]
	**Data paper		**[https://www.nature.com/articles/s41597-021-01033-3? Data paper]
	*NBD fMRI corpus		*NBD fMRI corpus
	**Link		**Link
	**Data paper		**Data paper
	*Alice fMRI (English)		*Alice fMRI (English)
	**Link to whole brain		**[https://openneuro.org/datasets/ds002322/versions/1.0.4 Link to whole brain data]
	**Link to ROIs		**[https://sites.lsa.umich.edu/cnllab/2016/06/11/data-sharing-fmri-timecourses-story-listening/ Link to ROIs]
	**Data paper		**[https://aclanthology.org/2020.lrec-1.15/ Data paper]
	*Alice EEG (English)		*Alice EEG (English)
	**Link		**[https://deepblue.lib.umich.edu/data/concern/data_sets/bg257f92t Link]
	**Data paper		**[https://aclanthology.org/2020.lrec-1.15/ Data paper]
	*Appleseed MEG		*Appleseed MEG
	**Link		**[https://datadryad.org/stash/dataset/doi:10.5061/dryad.nvx0k6dv0 Link]
	**Paper		**[https://elifesciences.org/articles/72056 Paper]
	*MASC-MEG		*MASC-MEG
	**Link		**Link
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	*LPP EEG		*LPP EEG
	**Paper		**Paper


	==Toolkits==		==Toolkits==