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Louiqa: /* Dataset */

2014-06-25T06:04:20Z

Dataset

← Older revision		Revision as of 06:04, 25 June 2014
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	===Dataset===		===Dataset===

	Format for semEP input		Format for semEP input. I picked file names in an arbitrary manner.
	genes.txt - list of genes.		genes.txt - list of genes.
	geneGO.txt - gene-GO annotations; should be in a separate file since it needs to be refreshed.		geneGO.txt - gene-GO annotations; should be in a separate file since it needs to be refreshed.

2014-06-25T06:03:53Z

Dataset

← Older revision		Revision as of 06:03, 25 June 2014
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	geneGO.txt - gene-GO annotations; should be in a separate file since it needs to be refreshed.		geneGO.txt - gene-GO annotations; should be in a separate file since it needs to be refreshed.
	GO.txt - contains GO ID, GO term, GO link to AMIGO?		GO.txt - contains GO ID, GO term, GO link to AMIGO?
	GOGOdist.txt - distance for pairs of GO terms.		GOGOdist.txt - distance for pairs of GO terms. [Check with Guillermo re: computing using d_tax code.]

	== Summer 2012 Imprint Experiment ==		== Summer 2012 Imprint Experiment ==

2014-06-25T05:17:16Z

Visualization Tools and Datasets

← Older revision		Revision as of 05:17, 25 June 2014
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	This site will let you search for clinical trials based on conditions and interventions and		This site will let you search for clinical trials based on conditions and interventions and
	let you visualize the graphs and graph summaries.		let you visualize the graphs and graph summaries.

			===Dataset===

			Format for semEP input
			genes.txt - list of genes.
			geneGO.txt - gene-GO annotations; should be in a separate file since it needs to be refreshed.
			GO.txt - contains GO ID, GO term, GO link to AMIGO?
			GOGOdist.txt - distance for pairs of GO terms.

	== Summer 2012 Imprint Experiment ==		== Summer 2012 Imprint Experiment ==

2014-06-25T05:12:59Z

Tools and Datasets

← Older revision		Revision as of 05:12, 25 June 2014
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	Also Proceedings of RECOMB 2010. Bonnie Berger, editor. Pages 456-472, 2010. [http://www.informatik.uni-trier.de/~ley/db/conf/recomb/recomb2010.html#SahaHKRZ10]		Also Proceedings of RECOMB 2010. Bonnie Berger, editor. Pages 456-472, 2010. [http://www.informatik.uni-trier.de/~ley/db/conf/recomb/recomb2010.html#SahaHKRZ10]

	==Tools and Datasets==		==Visualization Tools and Datasets==

	===PattArAn semEP visualization===		===PattArAn semEP visualization===

2014-06-25T05:11:52Z

Tools and Datasets

← Older revision		Revision as of 05:11, 25 June 2014
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	==Tools and Datasets==		==Tools and Datasets==

			===PattArAn semEP visualization===

	===PattArAn DSG+GS graph summary portal for Arabidopsis===		===PattArAn DSG+GS graph summary portal for Arabidopsis===

2013-03-09T21:08:59Z

PattArAn ALI portal for Arabidopsis

← Older revision		Revision as of 21:08, 9 March 2013
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	This is a manually curated "ground truth" database corresponding to the literature based imprint		This is a manually curated "ground truth" database corresponding to the literature based imprint
	for triplets or doublets of elected Arabidopsis genes and their GO and PO annotations.		for triplets or doublets of elected Arabidopsis genes and their GO and PO annotations.
			[http://pang.umiacs.umd.edu/sentenceutility/]

	===PAnG portal for LinkedCT===		===PAnG portal for LinkedCT===

2013-03-09T21:08:08Z

PattArAn DSG+GS graph summary portal for Arabidopsis

← Older revision		Revision as of 21:08, 9 March 2013
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	===PattArAn DSG+GS graph summary portal for Arabidopsis===		===PattArAn DSG+GS graph summary portal for Arabidopsis===

	Arabidopsis genes, GO and PO annotations as of ~~xxx~~ 2012 [http://pattaran.umiacs.umd.edu/]		Arabidopsis genes, GO and PO annotations as of Fall 2012 [http://pattaran.umiacs.umd.edu/]
	This site will let you search for genes based on GO or PO terms and visualize their annotations		This site will let you search for genes based on GO or PO terms and visualize their annotations
	as well as graph summaries.		as well as graph summaries.

2013-03-09T21:07:38Z

PattArAn ALI portal for Arabidopsis

← Older revision		Revision as of 21:07, 9 March 2013
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	===PattArAn ALI portal for Arabidopsis===		===PattArAn ALI portal for Arabidopsis===

	This is a manually curated "ground truth" database corresponding to the literature based imprint for triplets or doublets of elected Arabidopsis genes and their GO and PO annotations.		This is a manually curated "ground truth" database corresponding to the literature based imprint
			for triplets or doublets of elected Arabidopsis genes and their GO and PO annotations.

	===PAnG portal for LinkedCT===		===PAnG portal for LinkedCT===

2013-03-09T21:06:36Z

Tools and Datasets

← Older revision		Revision as of 21:06, 9 March 2013
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	==Tools and Datasets==		==Tools and Datasets==

	===PattArAn portal for Arabidopsis===		===PattArAn DSG+GS graph summary portal for Arabidopsis===

	Arabidopsis genes, GO and PO annotations as of xxx 2012 [http://pattaran.umiacs.umd.edu/]		Arabidopsis genes, GO and PO annotations as of xxx 2012 [http://pattaran.umiacs.umd.edu/]
	This site will let you search for genes based on GO or PO terms and visualize their annotations		This site will let you search for genes based on GO or PO terms and visualize their annotations
	as well as graph summaries.		as well as graph summaries.

			===PattArAn ALI portal for Arabidopsis===

			This is a manually curated "ground truth" database corresponding to the literature based imprint for triplets or doublets of elected Arabidopsis genes and their GO and PO annotations.

	===PAnG portal for LinkedCT===		===PAnG portal for LinkedCT===

2012-12-13T17:09:53Z

← Older revision		Revision as of 17:09, 13 December 2012
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	~~'''MediaWiki has been successfully installed.'''~~

	Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.		Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.