UMIACS - User contributions [en]

Jira

2012-08-10T15:50:33Z

Arjun1:

JIRA is a request and bug tracker that UMIACS uses to provide our [[HelpDesk]] functionality to our users. It can be accessed [https://intranet.umiacs.umd.edu/jira here. ]

It is a web based ticketing system that allows both users and staff to maintain greater control over their tickets and makes communication and resolution of issues a seamless process.

== Using JIRA ==

JIRA automatically generates an account when it receives an email; '''by default, you can log in to JIRA with your UMIACS email address (not username!)''' and UMIACS [[Kerberos]] password.

[[Image:Jira_login.png]]

When you email JIRA, a ticket is created, and the email address your mail was sent from is added as a participant to the ticket -- this means that if you create a ticket using a non-UMIACS email address, you'll have to login to JIRA using that email address.

* Off site users use their email address and can request a password be emailed to them via this [https://intranet.umiacs.umd.edu/jira/secure/ForgotLoginDetails!default.jspa link]. '''(For external users only!)'''

Jira

2012-08-10T15:23:23Z

Arjun1:

JIRA is a request and bug tracker that UMIACS uses to provide our [[HelpDesk]] functionality to our users. It can be accessed [https://intranet.umiacs.umd.edu/jira here. ]

It is a web based ticketing system allowing both users and staff to maintain greater control over their tickets, and makes communication and resolution of issues a seamless process.

== Using JIRA ==

JIRA automatically generates an account when it receives an email; '''by default, you can log in to JIRA with your UMIACS email address (not username!)''' and UMIACS [[Kerberos]] password.

[[Image:Jira_login.png]]

When you email JIRA, a ticket is created, and the email address your mail was sent from is added as a participant to the ticket -- this means that if you create a ticket using a non-UMIACS email address, you'll have to login to JIRA using that email address.

* Off site users use their email address and can request a password be emailed to them via this [https://intranet.umiacs.umd.edu/jira/secure/ForgotLoginDetails!default.jspa link]. '''(For external users only!)'''

Jira

2012-08-10T15:20:33Z

Arjun1: DOCS-102

JIRA is a request and bug tracker that UMIACS uses to provide our [[HelpDesk]] functionality to our users. It can be accessed [https://intranet.umiacs.umd.edu/jira here. ]

It is a web based ticketing system allowing both users and staff to maintain greater control over their tickets, and makes communication and resolution of issues a seamless process.

== Using JIRA ==

JIRA automatically generates an account when it receives an email; '''by default, you can log in to JIRA with your UMIACS email address (not username!)''' and UMIACS [[Kerberos]] password.

[[Image:Jira_login.png]]

When you email JIRA, a ticket is created, and the email address your mail was sent from is added as a participant to the ticket -- this means that if you create a ticket using a non-UMIACS email address, you'll have to login to JIRA using that email address.

* Off site users use their email address and can request a password be emailed to them via this [https://intranet.umiacs.umd.edu/jira/secure/ForgotLoginDetails!default.jspa link].

CBCB

2012-06-13T19:32:33Z

Arjun1:

CBCB, or the UMD '''Center for Bioinformatics and Computational Biology''', is a multidisciplinary center dedicated to research on questions arising from the genome revolution.

== Clusters ==

CBCB can submit jobs on the clusters via the submit nodes:

* flicker01.umiacs.umd.edu
* flicker02.umiacs.umd.edu
* ibissub00.umiacs.umd.edu
* ibissub01.umiacs.umd.edu,

== Condor ==

CBCB can submit jobs to Condor using:

* ibis00.umiacs.umd.edu -> ibis23.umiacs.umd.edu

The machines are equipped with:
* 2 x Six-Core AMD Opteron(tm) Processor 2425 HE (2100MHz) (12 cores)
* 48 GB RAM
* 2 x 930 GB local scratch (/scratch0, /scratch1)
* RHEL5 x86_64

== Hadoop ==

Users can connect using:

* szhdname00.umiacs.umd.edu
* szhdname01.umiacs.umd.edu
* szhdnode00.umiacs.umd.edu -> szhdnode09.umiacs.umd.edu

All of the machines are equipped with:
* PowerEdge SC1425
* 2 x Intel(R) Xeon(TM) CPU 3.20GHz
* 4 GB Ram
* 400GB local scratch
* RHEL5 x86_64

== Additional Resources ==

Additionally, CBCB maintains the standalone devices:

'''Large'''
* mulberry.umiacs.umd.edu - Dell R905
** 4 x Six-Core AMD Opteron(tm) Processor 8431 (2400MHz) (24 Cores)
** 256 GB Ram
** 7 TiB local scratch disk (/scratch2)
** RHEL5 x86_64
* ginkgo.umiacs.umd.edu - Sun Fire X4600 M2
** 8 x Quad-Core AMD Opteron(tm) Processor 8356 (2300MHz) (32 Cores)
** 256 GB Ram
** 6 TiB local scratch disk (/scratch1)
** RHEL5 x86_64
* walnut.umiacs.umd.edu - Sun Fire X4600 M2
** 8 x Dual-Core AMD Opteron(tm) Processor 8220 (2800MHz) (16 Cores)
** 128 GB Ram
** 6 TiB local scratch disk (/scratch1)
** RHEL5 x86_64

'''Medium'''
* sycamore.umiacs.umd.edu - Sun Fire V40z
** 4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
** 32 GB Ram
** 100GB local scratch
** RHEL5 x86_64
** privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
** 4 x AMD Opteron(tm) Processor 850 (2400MHz)
** 32 GB Ram
** RHEL5 x86_64
* larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
** 4 x AMD Opteron(tm) Processor 850 (2400MHz)
** 32 GB Ram
** RHEL5 x86_64

'''Small'''
* beech.umiacs.umd.edu - Penguin Computing
** 2 x AMD Opteron(tm) Processor 250 (2400MHz)
** 8 GB Ram
** 100GB local scratch
** RHEL5 x86_64
* hemlock.umiacs.umd.edu - Penguin Computing
** 2 x AMD Opteron(tm) Processor 250 (2400MHz)
** 8 GB Ram
** 100GB local scratch
** RHEL5 x86_64

CBCB

2012-06-08T17:26:42Z

Arjun1: /* Additional Resources */

CBCB, or the UMD '''Center for Bioinformatics and Computational Biology''', is a multidisciplinary center dedicated to research on questions arising from the genome revolution.

== Clusters ==

CBCB can submit jobs on the clusters via the submit nodes:

* flicker01.umiacs.umd.edu
* flicker02.umiacs.umd.edu
* ibissub00.umiacs.umd.edu
* ibissub01.umiacs.umd.edu,

== Condor ==

CBCB can submit to jobs to Condor using:

* ibis00.umiacs.umd.edu -> ibis23.umiacs.umd.edu

The machines are equipped with:
* 2 x Six-Core AMD Opteron(tm) Processor 2425 HE (2100MHz) (12 cores)
* 48 GB RAM
* 2 x 930 GB local scratch (/scratch0, /scratch1)
* RHEL5 x86_64

== Hadoop ==

Users can connect using:

* szhdname00.umiacs.umd.edu
* szhdname01.umiacs.umd.edu
* szhdnode00.umiacs.umd.edu -> szhdnode09.umiacs.umd.edu

All of the machines are equipped with:
* PowerEdge SC1425
* 2 x Intel(R) Xeon(TM) CPU 3.20GHz
* 4 GB Ram
* 400GB local scratch
* RHEL5 x86_64

== Additional Resources ==

Additionally, CBCB maintains the standalone devices:

'''Large'''
* mulberry.umiacs.umd.edu - Dell R905
** 4 x Six-Core AMD Opteron(tm) Processor 8431 (2400MHz) (24 Cores)
** 256 GB Ram
** 7 TiB local scratch disk (/scratch2)
** RHEL5 x86_64
* ginkgo.umiacs.umd.edu - Sun Fire X4600 M2
** 8 x Quad-Core AMD Opteron(tm) Processor 8356 (2300MHz) (32 Cores)
** 256 GB Ram
** 6 TiB local scratch disk (/scratch1)
** RHEL5 x86_64
* walnut.umiacs.umd.edu - Sun Fire X4600 M2
** 8 x Dual-Core AMD Opteron(tm) Processor 8220 (2800MHz) (16 Cores)
** 128 GB Ram
** 6 TiB local scratch disk (/scratch1)
** RHEL5 x86_64

'''Medium'''
* sycamore.umiacs.umd.edu - Sun Fire V40z
** 4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
** 32 GB Ram
** 100GB local scratch
** RHEL5 x86_64
** privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
** 4 x AMD Opteron(tm) Processor 850 (2400MHz)
** 32 GB Ram
** RHEL5 x86_64
* larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
** 4 x AMD Opteron(tm) Processor 850 (2400MHz)
** 32 GB Ram
** RHEL5 x86_64

'''Small'''
* beech.umiacs.umd.edu - Penguin Computing
** 2 x AMD Opteron(tm) Processor 250 (2400MHz)
** 8 GB Ram
** 100GB local scratch
** RHEL5 x86_64
* hemlock.umiacs.umd.edu - Penguin Computing
** 2 x AMD Opteron(tm) Processor 250 (2400MHz)
** 8 GB Ram
** 100GB local scratch
** RHEL5 x86_64

CBCB

2012-06-08T17:26:17Z

Arjun1: /* Additional Resources */

CBCB, or the UMD '''Center for Bioinformatics and Computational Biology''', is a multidisciplinary center dedicated to research on questions arising from the genome revolution.

== Clusters ==

CBCB can submit jobs on the clusters via the submit nodes:

* flicker01.umiacs.umd.edu
* flicker02.umiacs.umd.edu
* ibissub00.umiacs.umd.edu
* ibissub01.umiacs.umd.edu,

== Condor ==

CBCB can submit to jobs to Condor using:

* ibis00.umiacs.umd.edu -> ibis23.umiacs.umd.edu

The machines are equipped with:
* 2 x Six-Core AMD Opteron(tm) Processor 2425 HE (2100MHz) (12 cores)
* 48 GB RAM
* 2 x 930 GB local scratch (/scratch0, /scratch1)
* RHEL5 x86_64

== Hadoop ==

Users can connect using:

* szhdname00.umiacs.umd.edu
* szhdname01.umiacs.umd.edu
* szhdnode00.umiacs.umd.edu -> szhdnode09.umiacs.umd.edu

All of the machines are equipped with:
* PowerEdge SC1425
* 2 x Intel(R) Xeon(TM) CPU 3.20GHz
* 4 GB Ram
* 400GB local scratch
* RHEL5 x86_64

== Additional Resources ==

Additionally, CBCB maintains the standalone devices:

'''Large'''
* mulberry.umiacs.umd.edu - Dell R905
** 4 x Six-Core AMD Opteron(tm) Processor 8431 (2400MHz) (24 Cores)
** 256 GB Ram
** 7 TiB local scratch disk (/scratch2)
** RHEL5 x86_64
* ginkgo.umiacs.umd.edu - Sun Fire X4600 M2
** 8 x Quad-Core AMD Opteron(tm) Processor 8356 (2300MHz) (32 Cores)
** 256 GB Ram
** 6 TiB local scratch disk (/scratch1)
** RHEL5 x86_64
* walnut.umiacs.umd.edu - Sun Fire X4600 M2
** 8 x Dual-Core AMD Opteron(tm) Processor 8220 (2800MHz) (16 Cores)
** 128 GB Ram
** 6 TiB local scratch disk (/scratch1)
** RHEL5 x86_64

'''Medium'''
* sycamore.umiacs.umd.edu - Sun Fire V40z
** 4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
** 32 GB Ram
** 100GB local scratch
** RHEL5 x86_64
** privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
** 4 x AMD Opteron(tm) Processor 850 (2400MHz)
** 32 GB Ram
RHEL5 x86_64
larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64

'''Small'''
* beech.umiacs.umd.edu - Penguin Computing
** 2 x AMD Opteron(tm) Processor 250 (2400MHz)
** 8 GB Ram
** 100GB local scratch
** RHEL5 x86_64
* hemlock.umiacs.umd.edu - Penguin Computing
** 2 x AMD Opteron(tm) Processor 250 (2400MHz)
** 8 GB Ram
** 100GB local scratch
** RHEL5 x86_64

CBCB

2012-06-08T17:24:51Z

Arjun1: /* Additional Resources */

CBCB, or the UMD '''Center for Bioinformatics and Computational Biology''', is a multidisciplinary center dedicated to research on questions arising from the genome revolution.

== Clusters ==

CBCB can submit jobs on the clusters via the submit nodes:

* flicker01.umiacs.umd.edu
* flicker02.umiacs.umd.edu
* ibissub00.umiacs.umd.edu
* ibissub01.umiacs.umd.edu,

== Condor ==

CBCB can submit to jobs to Condor using:

* ibis00.umiacs.umd.edu -> ibis23.umiacs.umd.edu

The machines are equipped with:
* 2 x Six-Core AMD Opteron(tm) Processor 2425 HE (2100MHz) (12 cores)
* 48 GB RAM
* 2 x 930 GB local scratch (/scratch0, /scratch1)
* RHEL5 x86_64

== Hadoop ==

Users can connect using:

* szhdname00.umiacs.umd.edu
* szhdname01.umiacs.umd.edu
* szhdnode00.umiacs.umd.edu -> szhdnode09.umiacs.umd.edu

All of the machines are equipped with:
* PowerEdge SC1425
* 2 x Intel(R) Xeon(TM) CPU 3.20GHz
* 4 GB Ram
* 400GB local scratch
* RHEL5 x86_64

== Additional Resources ==

Additionally, CBCB maintains the standalone devices:

'''Large'''
* mulberry.umiacs.umd.edu - Dell R905
** 4 x Six-Core AMD Opteron(tm) Processor 8431 (2400MHz) (24 Cores)
** 256 GB Ram
** 7 TiB local scratch disk (/scratch2)
** RHEL5 x86_64
* ginkgo.umiacs.umd.edu - Sun Fire X4600 M2
** 8 x Quad-Core AMD Opteron(tm) Processor 8356 (2300MHz) (32 Cores)
** 256 GB Ram
** 6 TiB local scratch disk (/scratch1)
** RHEL5 x86_64
* walnut.umiacs.umd.edu - Sun Fire X4600 M2
** 8 x Dual-Core AMD Opteron(tm) Processor 8220 (2800MHz) (16 Cores)
** 128 GB Ram
** 6 TiB local scratch disk (/scratch1)
** RHEL5 x86_64

'''Medium'''
sycamore.umiacs.umd.edu - Sun Fire V40z
4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
32 GB Ram
100GB local scratch
RHEL5 x86_64
privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64
larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64

'''Small'''
beech.umiacs.umd.edu - Penguin Computing
2 x AMD Opteron(tm) Processor 250 (2400MHz)
8 GB Ram
100GB local scratch
RHEL5 x86_64
hemlock.umiacs.umd.edu - Penguin Computing
2 x AMD Opteron(tm) Processor 250 (2400MHz)
8 GB Ram
100GB local scratch
RHEL5 x86_64

CBCB

2012-06-08T17:20:17Z

Arjun1: /* Hadoop */

CBCB, or the UMD '''Center for Bioinformatics and Computational Biology''', is a multidisciplinary center dedicated to research on questions arising from the genome revolution.

== Clusters ==

CBCB can submit jobs on the clusters via the submit nodes:

* flicker01.umiacs.umd.edu
* flicker02.umiacs.umd.edu
* ibissub00.umiacs.umd.edu
* ibissub01.umiacs.umd.edu,

== Condor ==

CBCB can submit to jobs to Condor using:

* ibis00.umiacs.umd.edu -> ibis23.umiacs.umd.edu

The machines are equipped with:
* 2 x Six-Core AMD Opteron(tm) Processor 2425 HE (2100MHz) (12 cores)
* 48 GB RAM
* 2 x 930 GB local scratch (/scratch0, /scratch1)
* RHEL5 x86_64

== Hadoop ==

Users can connect using:

* szhdname00.umiacs.umd.edu
* szhdname01.umiacs.umd.edu
* szhdnode00.umiacs.umd.edu -> szhdnode09.umiacs.umd.edu

All of the machines are equipped with:
* PowerEdge SC1425
* 2 x Intel(R) Xeon(TM) CPU 3.20GHz
* 4 GB Ram
* 400GB local scratch
* RHEL5 x86_64

== Additional Resources ==

Additionally, CBCB maintains the standalone devices:

'''Large'''
mulberry.umiacs.umd.edu - Dell R905
4 x Six-Core AMD Opteron(tm) Processor 8431 (2400MHz) (24 Cores)
256 GB Ram
7 TiB local scratch disk (/scratch2)
RHEL5 x86_64
ginkgo.umiacs.umd.edu - Sun Fire X4600 M2
8 x Quad-Core AMD Opteron(tm) Processor 8356 (2300MHz) (32 Cores)
256 GB Ram
6 TiB local scratch disk (/scratch1)
RHEL5 x86_64
walnut.umiacs.umd.edu - Sun Fire X4600 M2
8 x Dual-Core AMD Opteron(tm) Processor 8220 (2800MHz) (16 Cores)
128 GB Ram
6 TiB local scratch disk (/scratch1)
RHEL5 x86_64

'''Medium'''
sycamore.umiacs.umd.edu - Sun Fire V40z
4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
32 GB Ram
100GB local scratch
RHEL5 x86_64
privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64
larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64

'''Small'''
beech.umiacs.umd.edu - Penguin Computing
2 x AMD Opteron(tm) Processor 250 (2400MHz)
8 GB Ram
100GB local scratch
RHEL5 x86_64
hemlock.umiacs.umd.edu - Penguin Computing
2 x AMD Opteron(tm) Processor 250 (2400MHz)
8 GB Ram
100GB local scratch
RHEL5 x86_64

CBCB

2012-06-08T17:19:38Z

Arjun1: /* Condor */

CBCB, or the UMD '''Center for Bioinformatics and Computational Biology''', is a multidisciplinary center dedicated to research on questions arising from the genome revolution.

== Clusters ==

CBCB can submit jobs on the clusters via the submit nodes:

* flicker01.umiacs.umd.edu
* flicker02.umiacs.umd.edu
* ibissub00.umiacs.umd.edu
* ibissub01.umiacs.umd.edu,

== Condor ==

CBCB can submit to jobs to Condor using:

* ibis00.umiacs.umd.edu -> ibis23.umiacs.umd.edu

The machines are equipped with:
* 2 x Six-Core AMD Opteron(tm) Processor 2425 HE (2100MHz) (12 cores)
* 48 GB RAM
* 2 x 930 GB local scratch (/scratch0, /scratch1)
* RHEL5 x86_64

== Hadoop ==

Users can connect using:

szhdname00.umiacs.umd.edu
szhdname01.umiacs.umd.edu
szhdnode00.umiacs.umd.edu -> szhdnode09.umiacs.umd.edu

All of the machines are equipped with:
*PowerEdge SC1425
*2 x Intel(R) Xeon(TM) CPU 3.20GHz
*4 GB Ram
*400GB local scratch
*RHEL5 x86_64

== Additional Resources ==

Additionally, CBCB maintains the standalone devices:

'''Large'''
mulberry.umiacs.umd.edu - Dell R905
4 x Six-Core AMD Opteron(tm) Processor 8431 (2400MHz) (24 Cores)
256 GB Ram
7 TiB local scratch disk (/scratch2)
RHEL5 x86_64
ginkgo.umiacs.umd.edu - Sun Fire X4600 M2
8 x Quad-Core AMD Opteron(tm) Processor 8356 (2300MHz) (32 Cores)
256 GB Ram
6 TiB local scratch disk (/scratch1)
RHEL5 x86_64
walnut.umiacs.umd.edu - Sun Fire X4600 M2
8 x Dual-Core AMD Opteron(tm) Processor 8220 (2800MHz) (16 Cores)
128 GB Ram
6 TiB local scratch disk (/scratch1)
RHEL5 x86_64

'''Medium'''
sycamore.umiacs.umd.edu - Sun Fire V40z
4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
32 GB Ram
100GB local scratch
RHEL5 x86_64
privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64
larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64

'''Small'''
beech.umiacs.umd.edu - Penguin Computing
2 x AMD Opteron(tm) Processor 250 (2400MHz)
8 GB Ram
100GB local scratch
RHEL5 x86_64
hemlock.umiacs.umd.edu - Penguin Computing
2 x AMD Opteron(tm) Processor 250 (2400MHz)
8 GB Ram
100GB local scratch
RHEL5 x86_64

CBCB

2012-06-08T17:19:15Z

Arjun1: /* Clusters */

CBCB, or the UMD '''Center for Bioinformatics and Computational Biology''', is a multidisciplinary center dedicated to research on questions arising from the genome revolution.

== Clusters ==

CBCB can submit jobs on the clusters via the submit nodes:

* flicker01.umiacs.umd.edu
* flicker02.umiacs.umd.edu
* ibissub00.umiacs.umd.edu
* ibissub01.umiacs.umd.edu,

== Condor ==

CBCB can submit to jobs to Condor using:

ibis00.umiacs.umd.edu -> ibis23.umiacs.umd.edu

The machines are equipped with:
*2 x Six-Core AMD Opteron(tm) Processor 2425 HE (2100MHz) (12 cores)
*48 GB RAM
*2 x 930 GB local scratch (/scratch0, /scratch1)
*RHEL5 x86_64

== Hadoop ==

Users can connect using:

szhdname00.umiacs.umd.edu
szhdname01.umiacs.umd.edu
szhdnode00.umiacs.umd.edu -> szhdnode09.umiacs.umd.edu

All of the machines are equipped with:
*PowerEdge SC1425
*2 x Intel(R) Xeon(TM) CPU 3.20GHz
*4 GB Ram
*400GB local scratch
*RHEL5 x86_64

== Additional Resources ==

Additionally, CBCB maintains the standalone devices:

'''Large'''
mulberry.umiacs.umd.edu - Dell R905
4 x Six-Core AMD Opteron(tm) Processor 8431 (2400MHz) (24 Cores)
256 GB Ram
7 TiB local scratch disk (/scratch2)
RHEL5 x86_64
ginkgo.umiacs.umd.edu - Sun Fire X4600 M2
8 x Quad-Core AMD Opteron(tm) Processor 8356 (2300MHz) (32 Cores)
256 GB Ram
6 TiB local scratch disk (/scratch1)
RHEL5 x86_64
walnut.umiacs.umd.edu - Sun Fire X4600 M2
8 x Dual-Core AMD Opteron(tm) Processor 8220 (2800MHz) (16 Cores)
128 GB Ram
6 TiB local scratch disk (/scratch1)
RHEL5 x86_64

'''Medium'''
sycamore.umiacs.umd.edu - Sun Fire V40z
4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
32 GB Ram
100GB local scratch
RHEL5 x86_64
privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64
larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64

'''Small'''
beech.umiacs.umd.edu - Penguin Computing
2 x AMD Opteron(tm) Processor 250 (2400MHz)
8 GB Ram
100GB local scratch
RHEL5 x86_64
hemlock.umiacs.umd.edu - Penguin Computing
2 x AMD Opteron(tm) Processor 250 (2400MHz)
8 GB Ram
100GB local scratch
RHEL5 x86_64

CBCB

2012-06-08T16:16:32Z

Arjun1: /* Additional Resources */

CBCB, or the UMD '''Center for Bioinformatics and Computational Biology''', is a multidisciplinary center dedicated to research on questions arising from the genome revolution.

== Clusters ==

CBCB can submit jobs on the clusters via the submit nodes:

flicker01.umiacs.umd.edu
flicker02.umiacs.umd.edu
ibissub00.umiacs.umd.edu
ibissub01.umiacs.umd.edu,

== Condor ==

CBCB can submit to jobs to Condor using:

ibis00.umiacs.umd.edu -> ibis23.umiacs.umd.edu

The machines are equipped with:
*2 x Six-Core AMD Opteron(tm) Processor 2425 HE (2100MHz) (12 cores)
*48 GB RAM
*2 x 930 GB local scratch (/scratch0, /scratch1)
*RHEL5 x86_64

== Hadoop ==

Users can connect using:

szhdname00.umiacs.umd.edu
szhdname01.umiacs.umd.edu
szhdnode00.umiacs.umd.edu -> szhdnode09.umiacs.umd.edu

All of the machines are equipped with:
*PowerEdge SC1425
*2 x Intel(R) Xeon(TM) CPU 3.20GHz
*4 GB Ram
*400GB local scratch
*RHEL5 x86_64

== Additional Resources ==

Additionally, CBCB maintains the standalone devices:

'''Large'''
mulberry.umiacs.umd.edu - Dell R905
4 x Six-Core AMD Opteron(tm) Processor 8431 (2400MHz) (24 Cores)
256 GB Ram
7 TiB local scratch disk (/scratch2)
RHEL5 x86_64
ginkgo.umiacs.umd.edu - Sun Fire X4600 M2
8 x Quad-Core AMD Opteron(tm) Processor 8356 (2300MHz) (32 Cores)
256 GB Ram
6 TiB local scratch disk (/scratch1)
RHEL5 x86_64
walnut.umiacs.umd.edu - Sun Fire X4600 M2
8 x Dual-Core AMD Opteron(tm) Processor 8220 (2800MHz) (16 Cores)
128 GB Ram
6 TiB local scratch disk (/scratch1)
RHEL5 x86_64

'''Medium'''
sycamore.umiacs.umd.edu - Sun Fire V40z
4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
32 GB Ram
100GB local scratch
RHEL5 x86_64
privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64
larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64

'''Small'''
beech.umiacs.umd.edu - Penguin Computing
2 x AMD Opteron(tm) Processor 250 (2400MHz)
8 GB Ram
100GB local scratch
RHEL5 x86_64
hemlock.umiacs.umd.edu - Penguin Computing
2 x AMD Opteron(tm) Processor 250 (2400MHz)
8 GB Ram
100GB local scratch
RHEL5 x86_64

CBCB

2012-06-08T16:16:13Z

Arjun1: Removed references to Wren and Gene clusters, added information regarding current devices and clusters

CBCB, or the UMD '''Center for Bioinformatics and Computational Biology''', is a multidisciplinary center dedicated to research on questions arising from the genome revolution.

== Clusters ==

CBCB can submit jobs on the clusters via the submit nodes:

flicker01.umiacs.umd.edu
flicker02.umiacs.umd.edu
ibissub00.umiacs.umd.edu
ibissub01.umiacs.umd.edu,

== Condor ==

CBCB can submit to jobs to Condor using:

ibis00.umiacs.umd.edu -> ibis23.umiacs.umd.edu

The machines are equipped with:
*2 x Six-Core AMD Opteron(tm) Processor 2425 HE (2100MHz) (12 cores)
*48 GB RAM
*2 x 930 GB local scratch (/scratch0, /scratch1)
*RHEL5 x86_64

== Hadoop ==

Users can connect using:

szhdname00.umiacs.umd.edu
szhdname01.umiacs.umd.edu
szhdnode00.umiacs.umd.edu -> szhdnode09.umiacs.umd.edu

All of the machines are equipped with:
*PowerEdge SC1425
*2 x Intel(R) Xeon(TM) CPU 3.20GHz
*4 GB Ram
*400GB local scratch
*RHEL5 x86_64

== Additional Resources ==

Additionally, CBCB maintains the following computers:

'''Large'''
mulberry.umiacs.umd.edu - Dell R905
4 x Six-Core AMD Opteron(tm) Processor 8431 (2400MHz) (24 Cores)
256 GB Ram
7 TiB local scratch disk (/scratch2)
RHEL5 x86_64
ginkgo.umiacs.umd.edu - Sun Fire X4600 M2
8 x Quad-Core AMD Opteron(tm) Processor 8356 (2300MHz) (32 Cores)
256 GB Ram
6 TiB local scratch disk (/scratch1)
RHEL5 x86_64
walnut.umiacs.umd.edu - Sun Fire X4600 M2
8 x Dual-Core AMD Opteron(tm) Processor 8220 (2800MHz) (16 Cores)
128 GB Ram
6 TiB local scratch disk (/scratch1)
RHEL5 x86_64

'''Medium'''
sycamore.umiacs.umd.edu - Sun Fire V40z
4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
32 GB Ram
100GB local scratch
RHEL5 x86_64
privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64
larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
32 GB Ram
RHEL5 x86_64

'''Small'''
beech.umiacs.umd.edu - Penguin Computing
2 x AMD Opteron(tm) Processor 250 (2400MHz)
8 GB Ram
100GB local scratch
RHEL5 x86_64
hemlock.umiacs.umd.edu - Penguin Computing
2 x AMD Opteron(tm) Processor 250 (2400MHz)
8 GB Ram
100GB local scratch
RHEL5 x86_64