CBCB: Difference between revisions

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CBCB, or the UMD '''Center for Bioinformatics and Computational Biology''', is a multidisciplinary center dedicated to research on questions arising from the genome revolution.  
CBCB, or the UMD '''Center for Bioinformatics and Computational Biology''', is a multidisciplinary center dedicated to research on questions arising from the genome revolution.  


== Clusters ==
For CBCB related documentation, please see the [https://wiki.umiacs.umd.edu/cbcb-private CBCB Private Wiki]. You will need to be on the UMIACS network to access this wiki.
 
CBCB can submit jobs on the clusters via the submit nodes:
 
* flicker01.umiacs.umd.edu
* flicker02.umiacs.umd.edu
* ibissub00.umiacs.umd.edu
* ibissub01.umiacs.umd.edu,
 
== Condor ==
 
CBCB can submit to jobs to Condor using:
 
* ibis00.umiacs.umd.edu -> ibis23.umiacs.umd.edu
 
The machines are equipped with:
* 2 x Six-Core AMD Opteron(tm) Processor 2425 HE (2100MHz) (12 cores)
* 48 GB RAM
* 2 x 930 GB local scratch (/scratch0, /scratch1)
* RHEL5 x86_64
 
== Hadoop ==
 
Users can connect using:
 
* szhdname00.umiacs.umd.edu
* szhdname01.umiacs.umd.edu
* szhdnode00.umiacs.umd.edu -> szhdnode09.umiacs.umd.edu
 
All of the machines are equipped with:
* PowerEdge SC1425
* 2 x Intel(R) Xeon(TM) CPU 3.20GHz
* 4 GB Ram
* 400GB local scratch
* RHEL5 x86_64
 
== Additional Resources ==
 
Additionally, CBCB maintains the standalone devices:
 
'''Large'''
* mulberry.umiacs.umd.edu - Dell R905
** 4 x Six-Core AMD Opteron(tm) Processor 8431 (2400MHz) (24 Cores)
** 256 GB Ram
** 7 TiB local scratch disk (/scratch2)
** RHEL5 x86_64
* ginkgo.umiacs.umd.edu - Sun Fire X4600 M2
** 8 x Quad-Core AMD Opteron(tm) Processor 8356 (2300MHz) (32 Cores)
** 256 GB Ram
** 6 TiB local scratch disk (/scratch1)
** RHEL5 x86_64
* walnut.umiacs.umd.edu - Sun Fire X4600 M2
** 8 x Dual-Core AMD Opteron(tm) Processor 8220 (2800MHz) (16 Cores)
** 128 GB Ram
** 6 TiB local scratch disk (/scratch1)
** RHEL5 x86_64
 
'''Medium'''
    sycamore.umiacs.umd.edu - Sun Fire V40z
        4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
        32 GB Ram
        100GB local scratch
        RHEL5 x86_64
    privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
        4 x AMD Opteron(tm) Processor 850 (2400MHz)
        32 GB Ram
        RHEL5 x86_64
    larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
        4 x AMD Opteron(tm) Processor 850 (2400MHz)
        32 GB Ram
        RHEL5 x86_64
 
'''Small'''
    beech.umiacs.umd.edu - Penguin Computing
        2 x AMD Opteron(tm) Processor 250 (2400MHz)
        8 GB Ram
        100GB local scratch
        RHEL5 x86_64
    hemlock.umiacs.umd.edu - Penguin Computing
        2 x AMD Opteron(tm) Processor 250 (2400MHz)
        8 GB Ram
        100GB local scratch
        RHEL5 x86_64

Latest revision as of 19:45, 8 August 2012

CBCB, or the UMD Center for Bioinformatics and Computational Biology, is a multidisciplinary center dedicated to research on questions arising from the genome revolution.

For CBCB related documentation, please see the CBCB Private Wiki. You will need to be on the UMIACS network to access this wiki.

Retrieved from "https://wiki.umiacs.umd.edu/umiacs/index.php?title=CBCB&oldid=4416"