Nexus/CBCB

The Nexus computational resources and scheduler house the CBCB's new computational partition.

Submission Nodes

There are two submission nodes for Nexus exclusively available for CBCB users.

• nexuscbcb00.umiacs.umd.edu
• nexuscbcb01.umiacs.umd.edu

Resources

The new CBCB partition has 22 new nodes with 32 AMD EPYC-7313 cores and 2000GB of memory each. CBCB users also has access to submitting jobs and accessing resources like GPUs in other partitions in Nexus.

QoS

Currently CBCB users have access to all the default QoS in the cbcb partition using the cbcb account however there is one additional QoS called highmem that allows significantly increased memory to be allocated.

$ show_qos
        Name     MaxWall MaxJobs                        MaxTRES                      MaxTRESPU              GrpTRES
------------ ----------- ------- ------------------------------ ------------------------------ --------------------
      normal
   scavenger  2-00:00:00             cpu=64,gres/gpu=8,mem=256G   cpu=192,gres/gpu=24,mem=768G
      medium  2-00:00:00               cpu=8,gres/gpu=2,mem=64G
        high  1-00:00:00             cpu=16,gres/gpu=4,mem=128G
     default  3-00:00:00               cpu=4,gres/gpu=1,mem=32G
        tron                                                        cpu=32,gres/gpu=4,mem=256G
   huge-long 10-00:00:00             cpu=32,gres/gpu=8,mem=256G
        clip                                                                                      cpu=339,mem=2926G
       class                                                        cpu=32,gres/gpu=4,mem=256G
       gamma                                                                                      cpu=179,mem=1511G
         mc2                                                                                      cpu=307,mem=1896G
        cbcb                                                                                     cpu=913,mem=46931G
     highmem 21-00:00:00                       cpu=32,mem=2000G

Jobs

You will need to specify a --partition=cbcb, --account=cbcb and a specific --qos when you submit jobs into the CBCB partition.

[derek@nexuscbcb00:~ ] $ srun --pty --mem=2000G --qos=highmem --partition=cbcb --account=cbcb --time 1-00:00:00 bash
srun: job 218872 queued and waiting for resources
srun: job 218872 has been allocated resources
[derek@cbcb00:~ ] $ scontrol show job 218872
JobId=218872 JobName=bash
   UserId=derek(2174) GroupId=derek(22174) MCS_label=N/A
   Priority=897 Nice=0 Account=cbcb QOS=highmem
   JobState=RUNNING Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=0 Reboot=0 ExitCode=0:0
   RunTime=00:00:07 TimeLimit=1-00:00:00 TimeMin=N/A
   SubmitTime=2022-11-18T11:09:28 EligibleTime=2022-11-18T11:09:28
   AccrueTime=2022-11-18T11:09:28
   StartTime=2022-11-18T11:09:28 EndTime=2022-11-19T11:09:28 Deadline=N/A
   PreemptEligibleTime=2022-11-18T11:09:28 PreemptTime=None
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2022-11-18T11:09:28 Scheduler=Main
   Partition=cbcb AllocNode:Sid=nexuscbcb00:25443
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=cbcb00
   BatchHost=cbcb00
   NumNodes=1 NumCPUs=1 NumTasks=1 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   TRES=cpu=1,mem=2000G,node=1,billing=2251
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   MinCPUsNode=1 MinMemoryNode=2000G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=bash
   WorkDir=/nfshomes/derek
   Power=

Migration

Home Directories

The Nexus runs on our NFShomes home directories and not /cbcbhomes/$USERNAME. As part of the process of migrating into Nexus you may need or want to copy any shell customization from your existing /cbcbhomes to your new home directory. To make this transition easier /cbcbhomes is available to the CBCB submission nodes.

Operating System / Software

Previously CBCB's cluster was running RHEL7. The Nexus is running exclusively RHEL8 so any software you may have compiled may need to be re-compiled to work correctly in this new environment. The CBCB module tree for RHEL8 has just been started (and may not be populated) and if you do not see the modules you need you should reach out to the maintainers.