CBCB

CBCB, or the UMD Center for Bioinformatics and Computational Biology, is a multidisciplinary center dedicated to research on questions arising from the genome revolution.

Clusters

CBCB can submit jobs on the clusters via the submit nodes:

• flicker01.umiacs.umd.edu
• flicker02.umiacs.umd.edu
• ibissub00.umiacs.umd.edu
• ibissub01.umiacs.umd.edu,

Condor

CBCB can submit to jobs to Condor using:

• ibis00.umiacs.umd.edu -> ibis23.umiacs.umd.edu

The machines are equipped with:

• 2 x Six-Core AMD Opteron(tm) Processor 2425 HE (2100MHz) (12 cores)
• 48 GB RAM
• 2 x 930 GB local scratch (/scratch0, /scratch1)
• RHEL5 x86_64

Hadoop

Users can connect using:

   szhdname00.umiacs.umd.edu
   szhdname01.umiacs.umd.edu
   szhdnode00.umiacs.umd.edu -> szhdnode09.umiacs.umd.edu

All of the machines are equipped with:

  *PowerEdge SC1425
  *2 x Intel(R) Xeon(TM) CPU 3.20GHz
  *4 GB Ram
  *400GB local scratch
  *RHEL5 x86_64

Additional Resources

Additionally, CBCB maintains the standalone devices:

Large

   mulberry.umiacs.umd.edu - Dell R905
       4 x Six-Core AMD Opteron(tm) Processor 8431 (2400MHz) (24 Cores)
       256 GB Ram
       7 TiB local scratch disk (/scratch2)
       RHEL5 x86_64 
   ginkgo.umiacs.umd.edu - Sun Fire X4600 M2
       8 x Quad-Core AMD Opteron(tm) Processor 8356 (2300MHz) (32 Cores)
       256 GB Ram
       6 TiB local scratch disk (/scratch1)
       RHEL5 x86_64 
   walnut.umiacs.umd.edu - Sun Fire X4600 M2
       8 x Dual-Core AMD Opteron(tm) Processor 8220 (2800MHz) (16 Cores)
       128 GB Ram
       6 TiB local scratch disk (/scratch1)
       RHEL5 x86_64

Medium

   sycamore.umiacs.umd.edu - Sun Fire V40z
       4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
       32 GB Ram
       100GB local scratch
       RHEL5 x86_64 
   privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
       4 x AMD Opteron(tm) Processor 850 (2400MHz)
       32 GB Ram
       RHEL5 x86_64 
   larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
       4 x AMD Opteron(tm) Processor 850 (2400MHz)
       32 GB Ram
       RHEL5 x86_64 

Small

   beech.umiacs.umd.edu - Penguin Computing
       2 x AMD Opteron(tm) Processor 250 (2400MHz)
       8 GB Ram
       100GB local scratch
       RHEL5 x86_64 
   hemlock.umiacs.umd.edu - Penguin Computing
       2 x AMD Opteron(tm) Processor 250 (2400MHz)
       8 GB Ram
       100GB local scratch
       RHEL5 x86_64