CBCB: Difference between revisions

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'''Medium'''
'''Medium'''
    sycamore.umiacs.umd.edu - Sun Fire V40z
* sycamore.umiacs.umd.edu - Sun Fire V40z
        4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
** 4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
        32 GB Ram
** 32 GB Ram
        100GB local scratch
** 100GB local scratch
        RHEL5 x86_64  
** RHEL5 x86_64  
    privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
** privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
        4 x AMD Opteron(tm) Processor 850 (2400MHz)
** 4 x AMD Opteron(tm) Processor 850 (2400MHz)
        32 GB Ram
** 32 GB Ram
        RHEL5 x86_64  
RHEL5 x86_64  
    larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
        4 x AMD Opteron(tm) Processor 850 (2400MHz)
4 x AMD Opteron(tm) Processor 850 (2400MHz)
        32 GB Ram
32 GB Ram
        RHEL5 x86_64  
RHEL5 x86_64  


'''Small'''
'''Small'''
    beech.umiacs.umd.edu - Penguin Computing
* beech.umiacs.umd.edu - Penguin Computing
        2 x AMD Opteron(tm) Processor 250 (2400MHz)
** 2 x AMD Opteron(tm) Processor 250 (2400MHz)
        8 GB Ram
** 8 GB Ram
        100GB local scratch
** 100GB local scratch
        RHEL5 x86_64  
** RHEL5 x86_64  
    hemlock.umiacs.umd.edu - Penguin Computing
* hemlock.umiacs.umd.edu - Penguin Computing
        2 x AMD Opteron(tm) Processor 250 (2400MHz)
** 2 x AMD Opteron(tm) Processor 250 (2400MHz)
        8 GB Ram
** 8 GB Ram
        100GB local scratch
** 100GB local scratch
        RHEL5 x86_64
** RHEL5 x86_64

Revision as of 17:26, 8 June 2012

CBCB, or the UMD Center for Bioinformatics and Computational Biology, is a multidisciplinary center dedicated to research on questions arising from the genome revolution.

Clusters

CBCB can submit jobs on the clusters via the submit nodes:

  • flicker01.umiacs.umd.edu
  • flicker02.umiacs.umd.edu
  • ibissub00.umiacs.umd.edu
  • ibissub01.umiacs.umd.edu,

Condor

CBCB can submit to jobs to Condor using:

  • ibis00.umiacs.umd.edu -> ibis23.umiacs.umd.edu

The machines are equipped with:

  • 2 x Six-Core AMD Opteron(tm) Processor 2425 HE (2100MHz) (12 cores)
  • 48 GB RAM
  • 2 x 930 GB local scratch (/scratch0, /scratch1)
  • RHEL5 x86_64

Hadoop

Users can connect using:

  • szhdname00.umiacs.umd.edu
  • szhdname01.umiacs.umd.edu
  • szhdnode00.umiacs.umd.edu -> szhdnode09.umiacs.umd.edu

All of the machines are equipped with:

  • PowerEdge SC1425
  • 2 x Intel(R) Xeon(TM) CPU 3.20GHz
  • 4 GB Ram
  • 400GB local scratch
  • RHEL5 x86_64

Additional Resources

Additionally, CBCB maintains the standalone devices:

Large

  • mulberry.umiacs.umd.edu - Dell R905
    • 4 x Six-Core AMD Opteron(tm) Processor 8431 (2400MHz) (24 Cores)
    • 256 GB Ram
    • 7 TiB local scratch disk (/scratch2)
    • RHEL5 x86_64
  • ginkgo.umiacs.umd.edu - Sun Fire X4600 M2
    • 8 x Quad-Core AMD Opteron(tm) Processor 8356 (2300MHz) (32 Cores)
    • 256 GB Ram
    • 6 TiB local scratch disk (/scratch1)
    • RHEL5 x86_64
  • walnut.umiacs.umd.edu - Sun Fire X4600 M2
    • 8 x Dual-Core AMD Opteron(tm) Processor 8220 (2800MHz) (16 Cores)
    • 128 GB Ram
    • 6 TiB local scratch disk (/scratch1)
    • RHEL5 x86_64

Medium

  • sycamore.umiacs.umd.edu - Sun Fire V40z
    • 4 x Dual Core AMD Opteron(tm) Processor 875 (2200MHz) (8 Cores)
    • 32 GB Ram
    • 100GB local scratch
    • RHEL5 x86_64
    • privet.umiacs.umd.edu - Sun Fire V40z (OEM Chassis)
    • 4 x AMD Opteron(tm) Processor 850 (2400MHz)
    • 32 GB Ram

RHEL5 x86_64 larch.umiacs.umd.edu - Sun Fire V40z (OEM Chassis) 4 x AMD Opteron(tm) Processor 850 (2400MHz) 32 GB Ram RHEL5 x86_64

Small

  • beech.umiacs.umd.edu - Penguin Computing
    • 2 x AMD Opteron(tm) Processor 250 (2400MHz)
    • 8 GB Ram
    • 100GB local scratch
    • RHEL5 x86_64
  • hemlock.umiacs.umd.edu - Penguin Computing
    • 2 x AMD Opteron(tm) Processor 250 (2400MHz)
    • 8 GB Ram
    • 100GB local scratch
    • RHEL5 x86_64