Cbcb:Pop-Lab:Software

Software developed by members of our group

AMOS - open-source assembly package
Bambus - hierachical genome scaffolder
Figaro - sequence trimmer that does not require knowledge about the vector sequence
MetaAmos - a metagenomic assembly pipeline for AMOS
MetaStats - statistical methods for comparing metagenomic samples
On-Soma - scaffolder for optical mapping data
ARDB - antibiotic resistance database
Bowtie - ultrafast and memory-efficient short read aligner
Prokaryotic annotation pipeline
Comparative annotation viewer
Partition