Francisella tularensis holarctica MI001730

Center: Baylor

 Status: Assembly (118 contigs; 1,765,520 bp; maxLen=87,330 bp; avgLen=14,962 bp)

Data

Libraries:

 CENTER  PROJECT     STRAIN   LIB               TYPE SIZE STDEV COUNT   LOCATION
 BCM     4WG_FTUL.MI MI001730 4WG_FTUL.MI_000pA 454  .    .     162,763 SRA 
 BCM     4WG_FTUL.MI MI001730 4WG_FTUL.MI_000sA 454  .    .     584,009 SRA
 Total                                                          746,772

Assembly

2007_0722_454 -> best

 4WG_FTUL.MI_000pA & 4WG_FTUL.MI_000sA libraries
 => 15 scaff, 97 LargeContigs, 1,759,402 bp
 /* 
 **  Consensus results.
 */
 consensusResults
 {
       readStatus
       {
               numberAssembled = 555318;
               numberPartial   = 4546;
               numberSingleton = 3066;
               numberRepeat    = 19988;
               numberOutlier   = 1091;
       }
                                                                                                
       pairedReadStatus
       {
               numberWithBothMapped   = 82876;
               numberWithOneUnmapped  = 20539;
               numberMultiplyMapped   = 10111;
               numberWithBothUnmapped = 30794;
       }
                                                                                                
       scaffoldMetrics
       {
               numberOfScaffolds   = 15;
               numberOfBases       = 1759402;
                                                                                                               avgScaffoldSize     = 117293;
               N50ScaffoldSize     = 260966;
               largestScaffoldSize = 364856;
       }
                                                                                                
       largeContigMetrics
       {
               numberOfContigs   = 97;
               numberOfBases     = 1751702;
                                                                                                
               avgContigSize     = 18058;
               N50ContigSize     = 25363;
               largestContigSize = 87351;
                                                                                                
               Q40PlusBases      = 1751175, 99.97%;
               Q39MinusBases     = 527, 0.03%;
       }
                                                                                                
       allContigMetrics
       {
               numberOfContigs = 177;
               numberOfBases   = 1771992;
       }
 }