Francisella tularensis novicida U112

Alignment with 33KB Schu S4 repeat

 /nfshomes/dpuiu/Data/F_tularensis/NCBI/Novicida/NC_008601.fna /nfshomes/dpuiu/Data/F_tularensis/NCBI/A/NC_006570.1374371-1408282.fna
 NUCMER

     [S1]     [E1]  |     [S2]     [E2]  |  [LEN 1]  [LEN 2]  |  [% IDY]  |  [LEN R]  [LEN Q]  |  [COV R]  [COV Q]  | [TAGS]
 ===============================================================================================================================
   475907   481194  |     5559      270  |     5288     5290  |    99.26  |  1910031    33912  |     0.28    15.60  | gi|118496615|ref|NC_008601.1|      NC_006570.1_1374371_1408282
  1372915  1401927  |      209    29236  |    29013    29028  |    98.16  |  1910031    33912  |     1.52    85.60  | gi|118496615|ref|NC_008601.1|      NC_006570.1_1374371_1408282
  1402059  1405779  |    29224    32962  |     3721     3739  |    97.73  |  1910031    33912  |     0.19    11.03  | gi|118496615|ref|NC_008601.1|      NC_006570.1_1374371_1408282
  1847179  1852600  |        1     5424  |     5422     5424  |    99.17  |  1910031    33912  |     0.28    15.99  | gi|118496615|ref|NC_008601.1|      NC_006570.1_1374371_1408282

 Possible mis-assembly: Region 270-5424 of the repeat aligns 3 times to U112 ? This is a 2 copy repeat in Schu S4 & OSU18.