Search results

Page title matches

• Communal Software
  ...as of March 2015. Please move towards using Red Hat 7 machines and [[CBCB Software Modules]]. </p> ...have root access on their machines or the communal servers. Communal CBCB software is therefore typically installed in
  3 KB (366 words) - 18:55, 3 March 2015
• CBCB Software Modules
  Starting in the Spring of 2015, communal CBCB Bioinformatics Software has been installed using GNU Modules. CBCB Software modules are already configured for interactive shells on Red Hat 7 machines
  6 KB (830 words) - 18:43, 15 October 2021

Page text matches

• Communal Software
  ...as of March 2015. Please move towards using Red Hat 7 machines and [[CBCB Software Modules]]. </p> ...have root access on their machines or the communal servers. Communal CBCB software is therefore typically installed in
  3 KB (366 words) - 18:55, 3 March 2015
• CBCB Software Modules
  Starting in the Spring of 2015, communal CBCB Bioinformatics Software has been installed using GNU Modules. CBCB Software modules are already configured for interactive shells on Red Hat 7 machines
  6 KB (830 words) - 18:43, 15 October 2021
• Dpuiu alignment
  * We present a software tool for sequence alignment processing. * The software takes as input alignment data which is generally very fragmented (low ident
  2 KB (306 words) - 18:57, 5 October 2009
• Getting Started in CBCB
  ...as of March 2015. Please move towards using Red Hat 7 machines and [[CBCB Software Modules]]. </p> ...mmon settings files that set our path variables to include commonly shared software repositories.
  5 KB (768 words) - 14:32, 25 February 2022
• Main Page
  ...d;">NEW!&nbsp;</span><span style="font-weight: bold">Read about the [[CBCB Software Modules]]</span> *[[CBCB Software Modules]]
  3 KB (417 words) - 14:26, 25 February 2022
• Pop group meeting
  MetaSim software: ...p://www.nature.com/nmeth/journal/v5/n10/full/nmeth1008-903.html Scientific software: seeing the SNPs between us] Nature Methods
  7 KB (963 words) - 21:04, 8 December 2008
• Dpuiu Perl
  * [http://bonsai.hgc.jp/~mdehoon/software/cluster/cluster.pdf Algorithm::Cluster] ./Build.PL --prefix /fs/szdevel/core-cbcb-software/Linux-x86_64
  8 KB (1,058 words) - 20:32, 21 April 2011
• Repeat search
  = Software Packages =
  3 KB (329 words) - 18:25, 18 February 2010
• Dpuiu Assemblathon
  # Which assembly software should I use? # What parameters should I use when I run the software?
  30 KB (3,379 words) - 17:07, 1 August 2011
• Dpuiu articles
  ...Pubmed_RVDocSum GeneX Va: VBC open source microarray database and analysis software.] Biotechniques. 2004 Apr;36(4):634-8, 640, 642
  4 KB (539 words) - 15:08, 12 July 2011
• Short read sequencing
  = Read Mapping Software = * [http://www.sanger.ac.uk/Software/analysis/SSAHA/ Web site(Sanger)]
  8 KB (976 words) - 15:38, 4 December 2008
• WPip article
  ...ot, M. Shumway, C. Antonescu, and S. L. Salzberg. 2004. Versatile and open software for comparing large genomes. Genome Biol 5:R12.
  5 KB (805 words) - 12:39, 11 December 2008
• Francisella tularensis holarctica OSU18
  ...equence bases were called using the Applied Biosystems sequencing analysis software KB Basecaller. The WGS reads were assembled by using Atlas (11) and Phrap (
  7 KB (873 words) - 18:55, 8 December 2008
• Dpuiu Linux
  ...package of M4 macros that produce shell scripts to automatically configure software source code packages * [http://www.gnu.org/software/m4/m4.html m4] [http://www.gnu.org/software/m4/manual/m4.pdf man] implementation of the traditional Unix macro processo
  7 KB (927 words) - 13:08, 12 August 2011
• NCBI submission
  oXygen: software used by NCBI; license required
  12 KB (1,560 words) - 14:25, 1 August 2011
• Dpuiu CA
  ''We recommend removing reads that do not pass the GA analysis software Failed_Chastity fi lter before attempting to assemble the sequence.'' ''These reads have an “N” in the last column of the GA analysis software export file.''
  40 KB (5,144 words) - 20:16, 26 July 2011
• Trace formatting
  Software: * [http://www.pacbiodevnet.com/smrtanalysis/software/smrtanalysis smrtanalysis]
  37 KB (4,720 words) - 14:19, 20 July 2011
• Dpuiu HTS
  ''Modified Celera Assembler: the Celera Assembler software has modules for successive phases of assembly: pairwise overlap detection; ...more prevalent in pyro reads than Sanger reads. We therefore modified the software to search for matches in compressed sequence, in which all single-letter re
  115 KB (11,124 words) - 03:35, 22 December 2011