Cbcb:Pop-Lab:Software: Difference between revisions
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[http://www.cbcb.umd.edu/soma On-Soma] - scaffolder for optical mapping data <br> | [http://www.cbcb.umd.edu/soma On-Soma] - scaffolder for optical mapping data <br> | ||
[http://ardb.cbcb.umd.edu ARDB] - antibiotic resistance database <br> | [http://ardb.cbcb.umd.edu ARDB] - antibiotic resistance database <br> | ||
[http://bowtie-bio.sourceforge.net Bowtie] - ultrafast and memory-efficient short read aligner<br> | |||
Prokaryotic annotation pipeline <br> | Prokaryotic annotation pipeline <br> | ||
Comparative annotation viewer <br> | Comparative annotation viewer <br> | ||
Revision as of 14:50, 28 September 2008
Software developed by members of our group
AMOS - open-source assembly package
Bambus - hierachical genome scaffolder
Figaro - sequence trimmer that does not require knowledge about the vector sequence
MetaStats - statistical methods for comparing metagenomic samples
On-Soma - scaffolder for optical mapping data
ARDB - antibiotic resistance database
Bowtie - ultrafast and memory-efficient short read aligner
Prokaryotic annotation pipeline
Comparative annotation viewer