Culex pipiens mitochondrion: Difference between revisions
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The contig has been circularized and rotated so that base 1 aligns to Anopheles gambiae complete mitochondrial genome (MSQMTCG) origin. | The contig has been circularized and rotated so that base 1 aligns to Anopheles gambiae complete mitochondrial genome (MSQMTCG) origin. | ||
/fs/szasmg2/Culex_pipiens_mito/cpqg_mito.contig (182 reads) | #/fs/szasmg2/Culex_pipiens_mito/cpqg_mito.contig (182 reads) | ||
/fs/szasmg2/Culex_pipiens_mito/cpqg_mito.fasta (15585 bp 21.83 GC%) | #/fs/szasmg2/Culex_pipiens_mito/cpqg_mito.fasta (15585 bp 21.83 GC%) | ||
/fs/szasmg2/Culex_pipiens_mito/2007_0802_WGA-2/submission | |||
$ buildAssemblyArchive cpqg.coninfo --prompt --subname umd-20081023-164200 | |||
Best megablast alignment: | Best megablast alignment: | ||
Revision as of 20:43, 23 October 2008
Data Sources
See: Culex_pipiens_symbiont#Data Sources
Referce: Name Len GC% culex5c05.p1k 15587 21.81 low GC%; best hit is Anopheles gambiae complete mitochondrial genome : 15363 bp (96% coverage, 86% max id)
Assembly
Location:
/fs/szasmg2/Culex_pipiens_mito/2007_0802_WGA-2
Circularized molecule
The contig has been circularized and rotated so that base 1 aligns to Anopheles gambiae complete mitochondrial genome (MSQMTCG) origin.
#/fs/szasmg2/Culex_pipiens_mito/cpqg_mito.contig (182 reads) #/fs/szasmg2/Culex_pipiens_mito/cpqg_mito.fasta (15585 bp 21.83 GC%)
/fs/szasmg2/Culex_pipiens_mito/2007_0802_WGA-2/submission $ buildAssemblyArchive cpqg.coninfo --prompt --subname umd-20081023-164200
Best megablast alignment:
EU352212 Aedes aegypti mitochondrion, complete genome Length=16655 Score = 1.790e+04 bits (9692), Expect = 0.0 Identities = 13278/14965 (88%), Gaps = 424/14965 (2%)