Culex pipiens mitochondrion: Difference between revisions
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= Data Sources = | |||
See: [[Culex_pipiens_symbiont#Data Sources]] | See: [[Culex_pipiens_symbiont#Data Sources]] | ||
| Line 6: | Line 7: | ||
culex5c05.p1k 15587 21.81 low GC%; best hit is Anopheles gambiae complete mitochondrial genome : 15363 bp (96% coverage, 86% max id) | culex5c05.p1k 15587 21.81 low GC%; best hit is Anopheles gambiae complete mitochondrial genome : 15363 bp (96% coverage, 86% max id) | ||
= Assembly = | |||
Location: | Location: | ||
/fs/szasmg2/Culex_pipiens_mito/2007_0802_WGA-2 | /fs/szasmg2/Culex_pipiens_mito/2007_0802_WGA-2 | ||
= Circularized molecule= | |||
The contig has been circularized and rotated so that base 1 aligns to Anopheles gambiae complete mitochondrial genome (MSQMTCG) origin. | The contig has been circularized and rotated so that base 1 aligns to Anopheles gambiae complete mitochondrial genome (MSQMTCG) origin. | ||
/fs/szasmg2/Culex_pipiens_mito/cpqg_mito.contig (182 reads) | #/fs/szasmg2/Culex_pipiens_mito/cpqg_mito.contig (182 reads) | ||
/fs/szasmg2/Culex_pipiens_mito/cpqg_mito.fasta (15585 bp 21.83 GC%) | #/fs/szasmg2/Culex_pipiens_mito/cpqg_mito.fasta (15585 bp 21.83 GC%) | ||
/fs/szasmg2/Culex_pipiens_mito/2007_0802_WGA-2/submission | |||
$ buildAssemblyArchive cpqg.coninfo --prompt --subname umd-20081023-164200 | |||
Best megablast alignment: | Best megablast alignment: | ||
| Line 22: | Line 26: | ||
Score = 1.790e+04 bits (9692), Expect = 0.0 | Score = 1.790e+04 bits (9692), Expect = 0.0 | ||
Identities = 13278/14965 (88%), Gaps = 424/14965 (2%) | Identities = 13278/14965 (88%), Gaps = 424/14965 (2%) | ||
= NCBI WGS submission = | |||
None. | |||
= NCBI AA submission = | |||
Prepared in: | |||
/fs/szasmg2/Culex_pipiens_mito/2007_0802_WGA-2/submission/umd-20081024-103200.tgz | |||
Not submitted yet. | |||
Latest revision as of 14:37, 24 October 2008
Data Sources
See: Culex_pipiens_symbiont#Data Sources
Referce: Name Len GC% culex5c05.p1k 15587 21.81 low GC%; best hit is Anopheles gambiae complete mitochondrial genome : 15363 bp (96% coverage, 86% max id)
Assembly
Location:
/fs/szasmg2/Culex_pipiens_mito/2007_0802_WGA-2
Circularized molecule
The contig has been circularized and rotated so that base 1 aligns to Anopheles gambiae complete mitochondrial genome (MSQMTCG) origin.
#/fs/szasmg2/Culex_pipiens_mito/cpqg_mito.contig (182 reads) #/fs/szasmg2/Culex_pipiens_mito/cpqg_mito.fasta (15585 bp 21.83 GC%)
/fs/szasmg2/Culex_pipiens_mito/2007_0802_WGA-2/submission $ buildAssemblyArchive cpqg.coninfo --prompt --subname umd-20081023-164200
Best megablast alignment:
EU352212 Aedes aegypti mitochondrion, complete genome Length=16655 Score = 1.790e+04 bits (9692), Expect = 0.0 Identities = 13278/14965 (88%), Gaps = 424/14965 (2%)
NCBI WGS submission
None.
NCBI AA submission
Prepared in:
/fs/szasmg2/Culex_pipiens_mito/2007_0802_WGA-2/submission/umd-20081024-103200.tgz
Not submitted yet.