Cbcb:Pop-Lab:Software: Difference between revisions
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[http://amos.sourceforge.net/docs/bambus Bambus] - hierachical genome scaffolder <br> | [http://amos.sourceforge.net/docs/bambus Bambus] - hierachical genome scaffolder <br> | ||
[http://amos.sourceforge.net/Figaro Figaro] - sequence trimmer that does not require knowledge about the vector sequence <br> | [http://amos.sourceforge.net/Figaro Figaro] - sequence trimmer that does not require knowledge about the vector sequence <br> | ||
[http://www.cbcb.umd.edu/software/metamos MetaAmos] - a metagenomic assembly pipeline for AMOS <br> | |||
[http://www.cbcb.umd.edu/~whitej/metastats/detection.shtml MetaStats] - statistical methods for comparing metagenomic samples <br> | [http://www.cbcb.umd.edu/~whitej/metastats/detection.shtml MetaStats] - statistical methods for comparing metagenomic samples <br> | ||
[http://www.cbcb.umd.edu/soma On-Soma] - scaffolder for optical mapping data <br> | [http://www.cbcb.umd.edu/soma On-Soma] - scaffolder for optical mapping data <br> | ||
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Prokaryotic annotation pipeline <br> | Prokaryotic annotation pipeline <br> | ||
Comparative annotation viewer <br> | Comparative annotation viewer <br> | ||
[[ | [[Partition]] | ||
Latest revision as of 19:53, 8 June 2011
Software developed by members of our group
AMOS - open-source assembly package
Bambus - hierachical genome scaffolder
Figaro - sequence trimmer that does not require knowledge about the vector sequence
MetaAmos - a metagenomic assembly pipeline for AMOS
MetaStats - statistical methods for comparing metagenomic samples
On-Soma - scaffolder for optical mapping data
ARDB - antibiotic resistance database
Bowtie - ultrafast and memory-efficient short read aligner
Prokaryotic annotation pipeline
Comparative annotation viewer
Partition