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Latest revision as of 14:26, 25 February 2022

CBCB Private Wiki

You have to be on the UMIACS VPN to view the private wiki if you are not on campus!

CBCB private wiki

In addition to this wiki there is also the CBCB private wiki. It contains information internal to CBCB, such as information about how to use the cluster.

IMPORTANT (Read First)

NEW! Read about the CBCB Software Modules

The CBCB computational infrastructure is a shared resource and we all need to pitch in in order to make sure it works well for all of us. Most importantly, we need to ensure that our disk space and computational resources are used responsibly. The disk space, in particular, is a valuable commodity and thus it is important to pay attention to the following:

There are two types of disk space available (a full list of volumes is available at CBCB Storage) :
- Local hard drives (usually mounted as /scratch on the machines that have this resource). These are not backed up, are quite fast (they live physically close to the processor), but can only be 'seen' by the machine where they are mounted and, thus, require data staging in/out (which can take a while)
- Isilon storage (/fs/cbcb-lab, /fs/cbcb-scratch/*, etc.). This is very fast and very expensive disk and thus a limited resource.
You should remove any temporary results you don't need in the long term as soon as you've generated them, and compress all of the large files. Bzip2 works better than gzip but either should dramatically improve the space requirements, especially for text files such as fasta or fastq.

For more information on the CBCB resources see Getting Started in CBCB.

Seminars

Research In Progress (RIPS) schedule

Projects

Getting started

If you have just received a new UMIACS account through CBCB, follow the instructions on this page to get the basic information you'll need to start working:

@@ Line 1: / Line 1: @@
-<big>'''MediaWiki has been successfully installed.'''</big>
+== CBCB Private Wiki ==
+'''You have to be on the UMIACS VPN to view the private wiki if you are not on campus!'''
+*[https://wiki.umiacs.umd.edu/cbcb-private/index.php/Main_Page CBCB private wiki]
+In addition to this wiki there is also the CBCB private wiki. It contains information internal to CBCB, such as information about how to use the cluster.
+== IMPORTANT (Read First) ==
+<span style="color: green; font-size: medium; font-weight: bold;">NEW!&nbsp;</span><span style="font-weight: bold">Read about the [[CBCB Software Modules]]</span>
+The CBCB computational infrastructure is a shared resource and we all need to pitch in in order to make sure it works well for all of us.  Most importantly, we need to ensure that our disk space and computational resources are used responsibly.  The disk space, in particular, is a valuable commodity and thus it is important to pay attention to the following:
+* There are two types of disk space available (a full list of volumes is available at [https://wiki.umiacs.umd.edu/cbcb-private/index.php/Storage CBCB Storage]) :
+** Local hard drives (usually mounted as /scratch on the machines that have this resource).  These are not backed up, are quite fast (they live physically close to the processor), but can only be 'seen' by the machine where they are mounted and, thus, require data staging in/out (which can take a while)
+** Isilon storage (/fs/cbcb-lab, /fs/cbcb-scratch/*, etc.).  This is very fast and very expensive disk and thus a limited resource.
+* You should remove any temporary results you don't need in the long term as soon as you've generated them, and compress all of the large files.  Bzip2 works better than gzip but either should dramatically improve the space requirements, especially for text files such as fasta or fastq.
+For more information on the CBCB resources see [[Getting Started in CBCB]].
+== Seminars ==
+* [https://cbcb.umd.edu/research-in-progress Research In Progress (RIPS) schedule] <br>
+== Projects ==
+* [[Project:Pop-Lab|Pop-Lab]]
+* [[Project:Cloud-Computing|Cloud Computing]]
+* [https://cbcb.umd.edu/summer-internships CBCB Summer Internship Program] <br>
+* [[Metagenomics Reading Group (Wed 2pm)]]
-Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
 == Getting started ==
+If you have just received a new UMIACS account through CBCB, follow the instructions on this page to get the basic information you'll need to start working:<br>
-* [http://www.mediawiki.org/wiki/Help:Configuration_settings Configuration settings list]
+*[[Getting Started in CBCB]]
-* [http://www.mediawiki.org/wiki/Help:FAQ MediaWiki FAQ]
+*[[CBCB Software Modules]]
-* [http://mail.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
+*[https://wiki.umiacs.umd.edu/cbcb-private/index.php/Slurm Slurm]
+*[https://wiki.umiacs.umd.edu/cbcb-private/index.php/Storage CBCB Storage]
+*[https://wiki.umiacs.umd.edu/cbcb-private/index.php/Compute CBCB Computers]
+*[[Communal Software]]