Francisella tularensis novicida U112: Difference between revisions
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Alignment with | Alignment with 33KB Schu S4 repeat | ||
/nfshomes/dpuiu/Data/F_tularensis/NCBI/Novicida/NC_008601.fna /nfshomes/dpuiu/Data/F_tularensis/NCBI/A/NC_006570.1374371-1408282.fna | /nfshomes/dpuiu/Data/F_tularensis/NCBI/Novicida/NC_008601.fna /nfshomes/dpuiu/Data/F_tularensis/NCBI/A/NC_006570.1374371-1408282.fna | ||
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1847179 1852600 | 1 5424 | 5422 5424 | 99.17 | 1910031 33912 | 0.28 15.99 | gi|118496615|ref|NC_008601.1| NC_006570.1_1374371_1408282 | 1847179 1852600 | 1 5424 | 5422 5424 | 99.17 | 1910031 33912 | 0.28 15.99 | gi|118496615|ref|NC_008601.1| NC_006570.1_1374371_1408282 | ||
Possible mis-assembly: Region 270-5424 of the repeat aligns 3 times to U112 ? This is a 2 copy repeat in | Possible mis-assembly: Region 270-5424 of the repeat aligns 3 times to U112 ? This is a 2 copy repeat in Schu S4 & OSU18. | ||
Latest revision as of 18:48, 21 August 2007
Alignment with 33KB Schu S4 repeat
/nfshomes/dpuiu/Data/F_tularensis/NCBI/Novicida/NC_008601.fna /nfshomes/dpuiu/Data/F_tularensis/NCBI/A/NC_006570.1374371-1408282.fna NUCMER
[S1] [E1] | [S2] [E2] | [LEN 1] [LEN 2] | [% IDY] | [LEN R] [LEN Q] | [COV R] [COV Q] | [TAGS] =============================================================================================================================== 475907 481194 | 5559 270 | 5288 5290 | 99.26 | 1910031 33912 | 0.28 15.60 | gi|118496615|ref|NC_008601.1| NC_006570.1_1374371_1408282 1372915 1401927 | 209 29236 | 29013 29028 | 98.16 | 1910031 33912 | 1.52 85.60 | gi|118496615|ref|NC_008601.1| NC_006570.1_1374371_1408282 1402059 1405779 | 29224 32962 | 3721 3739 | 97.73 | 1910031 33912 | 0.19 11.03 | gi|118496615|ref|NC_008601.1| NC_006570.1_1374371_1408282 1847179 1852600 | 1 5424 | 5422 5424 | 99.17 | 1910031 33912 | 0.28 15.99 | gi|118496615|ref|NC_008601.1| NC_006570.1_1374371_1408282
Possible mis-assembly: Region 270-5424 of the repeat aligns 3 times to U112 ? This is a 2 copy repeat in Schu S4 & OSU18.