Dpuiu meeting notes: Difference between revisions

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= 09/22/08  (Pop lab)=
= 09/22/08  (Pop lab)=
* Stem cell lines
* Stem cell lines
* Oriogin or replication: http://en.wikipedia.org/wiki/DNA_replication
* [http://en.wikipedia.org/wiki/DNA_replication Origin or replication]
* GC skew non symmetric in mis-assembled genomes
* GC skew non symmetric in mis-assembled genomes
* GFP genes
* GFP genes
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* new consensus program
* new consensus program
* optical maps for Yersinia genomes
* optical maps for Yersinia genomes
= 09/30/09 (BRYAN WHITE; University of Illinois) =
* Adventures in metagenomics of the gastrointestinal microbiome of food animals
* Metagenomics uses 16S rRNA: 1600bp long (eukariotes use 28S rRNA)
* New Koc=h's postulate
* OTU: Operational Taxonomic Unit (97% identity)
* [http://www.thefreedictionary.com/commensal  commensal definition]
* core/variable microbiome
* rumen project
* [http://metagenomics.nmpdr.org/ metagenomics.nmpdr.org]
* [http://en.wikipedia.org/wiki/Carl_Woese Carl Woese]

Latest revision as of 15:16, 7 October 2008

09/22/08 (Pop lab)

  • Stem cell lines
  • Origin or replication
  • GC skew non symmetric in mis-assembled genomes
  • GFP genes
  • CRispers -short (30bp) palindromic repeats; Koonin paper (Biology direct)
  • CRispers - JGI paper
  • CA VAR paper
  • new consensus program
  • optical maps for Yersinia genomes

09/30/09 (BRYAN WHITE; University of Illinois)

  • Adventures in metagenomics of the gastrointestinal microbiome of food animals
  • Metagenomics uses 16S rRNA: 1600bp long (eukariotes use 28S rRNA)
  • New Koc=h's postulate
  • OTU: Operational Taxonomic Unit (97% identity)
  • commensal definition
  • core/variable microbiome
  • rumen project
  • metagenomics.nmpdr.org
  • Carl Woese