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• Cbcb:Pop-Lab:Software
  ==Software developed by members of our group== [http://www.cbcb.umd.edu/software/metamos MetaAmos] - a metagenomic assembly pipeline for AMOS <br>
  897 bytes (129 words) - 19:53, 8 June 2011
• Cbcb:Pop-Lab:How to use the partition software?
  8 bytes (1 word) - 01:31, 10 August 2009
• Communal Software
  ...as of March 2015. Please move towards using Red Hat 7 machines and [[CBCB Software Modules]]. </p> ...have root access on their machines or the communal servers. Communal CBCB software is therefore typically installed in
  3 KB (366 words) - 18:55, 3 March 2015
• CBCB Software Modules
  Starting in the Spring of 2015, communal CBCB Bioinformatics Software has been installed using GNU Modules. CBCB Software modules are already configured for interactive shells on Red Hat 7 machines
  6 KB (830 words) - 18:43, 15 October 2021

• File:454 Sequencing Software Manual v2.5p1 PartC.pdf (9.75 MB) - 19:03, 15 November 2010

• File:454 Sequencing Software Manual v2.5p1 PartD.pdf (7.09 MB) - 19:04, 15 November 2010

Page text matches

• Cbcb:Cloud-Computing
  == Software ==
  448 bytes (60 words) - 14:28, 25 February 2022
• Cbcb:Hcbravo-lab
  * Follow directions to setup other CBCB software. Instructions here: [[Getting_Started_in_CBCB#Configuring_Your_Home_Directo . /cbcb/software/hcorradaR/setup/setup.all.sh
  419 bytes (66 words) - 19:59, 7 August 2012
• Communal Software
  ...as of March 2015. Please move towards using Red Hat 7 machines and [[CBCB Software Modules]]. </p> ...have root access on their machines or the communal servers. Communal CBCB software is therefore typically installed in
  3 KB (366 words) - 18:55, 3 March 2015
• Cbcb:Pop-Lab
  ...- List of documentation on how to perform certain analyses, use different software, etc. * Software developed by us: [[Cbcb:Pop-Lab:Software]]
  2 KB (253 words) - 02:46, 30 June 2011
• Cbcb:Pop-Lab:How-to
  ...cb:Pop-Lab:How to use the partition software? | How do I use the partition software?]]<br>
  1 KB (237 words) - 16:43, 20 January 2010
• CBCB Software Modules
  Starting in the Spring of 2015, communal CBCB Bioinformatics Software has been installed using GNU Modules. CBCB Software modules are already configured for interactive shells on Red Hat 7 machines
  6 KB (830 words) - 18:43, 15 October 2021
• Dpuiu alignment
  * We present a software tool for sequence alignment processing. * The software takes as input alignment data which is generally very fragmented (low ident
  2 KB (306 words) - 18:57, 5 October 2009
• Cbcb:Pop-Lab:Software
  ==Software developed by members of our group== [http://www.cbcb.umd.edu/software/metamos MetaAmos] - a metagenomic assembly pipeline for AMOS <br>
  897 bytes (129 words) - 19:53, 8 June 2011
• Getting Started in CBCB
  ...as of March 2015. Please move towards using Red Hat 7 machines and [[CBCB Software Modules]]. </p> ...mmon settings files that set our path variables to include commonly shared software repositories.
  5 KB (768 words) - 14:32, 25 February 2022
• Main Page
  ...d;">NEW!&nbsp;</span><span style="font-weight: bold">Read about the [[CBCB Software Modules]]</span> *[[CBCB Software Modules]]
  3 KB (417 words) - 14:26, 25 February 2022
• Cbcb:Pop-Lab:Dan-Report
  Transitioned RunCmd software packaged to Condor version 7.
  852 bytes (121 words) - 16:57, 23 February 2009
• Help:Editing
  sections. The wiki software can automatically sections. The Wiki software can automatically
  17 KB (2,804 words) - 16:04, 10 January 2011
• Cbcb:Pop-Lab:Challenges
  The basic idea here is that we have pretty good software for doing comparative assembly once you're settled on a genome to use as a
  2 KB (298 words) - 16:38, 20 January 2010
• Pop group meeting
  MetaSim software: ...p://www.nature.com/nmeth/journal/v5/n10/full/nmeth1008-903.html Scientific software: seeing the SNPs between us] Nature Methods
  7 KB (963 words) - 21:04, 8 December 2008
• Dpuiu Perl
  * [http://bonsai.hgc.jp/~mdehoon/software/cluster/cluster.pdf Algorithm::Cluster] ./Build.PL --prefix /fs/szdevel/core-cbcb-software/Linux-x86_64
  8 KB (1,058 words) - 20:32, 21 April 2011
• Repeat search
  = Software Packages =
  3 KB (329 words) - 18:25, 18 February 2010
• Dpuiu Assemblathon
  # Which assembly software should I use? # What parameters should I use when I run the software?
  30 KB (3,379 words) - 17:07, 1 August 2011
• Dpuiu articles
  ...Pubmed_RVDocSum GeneX Va: VBC open source microarray database and analysis software.] Biotechniques. 2004 Apr;36(4):634-8, 640, 642
  4 KB (539 words) - 15:08, 12 July 2011
• Short read sequencing
  = Read Mapping Software = * [http://www.sanger.ac.uk/Software/analysis/SSAHA/ Web site(Sanger)]
  8 KB (976 words) - 15:38, 4 December 2008
• WPip article
  ...ot, M. Shumway, C. Antonescu, and S. L. Salzberg. 2004. Versatile and open software for comparing large genomes. Genome Biol 5:R12.
  5 KB (805 words) - 12:39, 11 December 2008