MBRC: Difference between revisions
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== Scratch Directories == | == Scratch Directories == | ||
=== Local Scratch Directory=== | === Local Scratch Directory=== |
Revision as of 18:36, 9 August 2019
The MBRC (MBRC) at the University of Maryland is located within the Institute for Advanced Computer Studies. The MBRC has a cluster of computational (CPU/GPU) resources that are available to be scheduled.
Compute Infrastructure
Each of UMIACS cluster computational infrastructures is accessed through the submission node. Users will need to submit jobs through the SLURM resource manager once they have logged into the submission node. Each cluster in UMIACS has different quality of service (QoS) that need to be selected upon submission of a job and many like this one has specific other resources such as GPUs that need to be requested for a job.
The current submission node(s) for MBRC is:
mbrcsub00.umiacs.umd.edu
Partition
There are two partitions to the MBRC SLURM computational infrastructure. If you do not specify a partition when submitting your job you will receive the dpart.
- dpart - This is the default partition and job allocations are guaranteed.
- scavenger - This is the alternate partition that allows jobs longer run times and more resources but is preemptable when jobs in the dpart are ready to be scheduled.
QoS
MBRC currently has 1 QoS for the dpart and 1 QoS for the scavenger partition. The important parts here is that in different QoS you can have a shorter/longer maximum wall time, a total number of jobs running at once and a maximum number of track-able resources (TRES) for the job. In the scavenger QoS there is one more constraint that you are restricted by the total number of TRES per user (over multiple jobs).
# show_qos Name MaxWall MaxJobs MaxTRES MaxTRESPU ---------- ----------- ------- ------------------------------ ------------- default 1-00:00:00 1 cpu=4,mem=32G,gres/gpu=1 scavenger 2-00:00:00 gres/gpu=8
GPUs
Jobs that require GPU resources need to explicitly request the resources within their job submission. This is done through Generic Resource Scheduling (GRES). Currently all nodes in the cluster are homogeneous however in the future this may not be the case. Users may use the most generic identifier in this case gpu a colon and a number to select without explicitly naming the type of GPU (ie. --gres gpu:4
for 4 GPUs).
$ sinfo -o "%15n %10c %10m %25f %25G" NODELIST CPUS MEMORY AVAIL_FEATURES GRES mbrc[00] 32 191896 (null) gpu:rtx2080ti:8 mbrc[01] 32 191896 (null) gpu:rtx2080ti:8
Job Submission and Management
Users should review our SLURM job submission and job management documentation.
A very quick start to get an interactive shell is as follows when run on the submission node. This will allocate 1 GPU with 16GB of memory (system RAM) in the QoS default for 4 hours maximum time. If the job goes beyond these limits either the memory allocation or the maximum time it will be terminated immediately.
srun --pty --gres=gpu:1 --mem=16G --qos=default --time=04:00:00 bash
[jheager2@mbrcsub00:~ ] $ srun --pty --gres=gpu:1 --mem=16G --qos=default --time=04:00:00 bash [jheager2@mbrc00:~ ] $ nvidia-smi -L GPU 0: GeForce RTX 2080 Ti (UUID: GPU-4ad5c018-b9bc-e664-233a-5d9ee8ad05cb)
Data Storage
Until the final storage investment arrives we have made available a temporary allocation of storage. This section is subject to change. There are 3 types of storage available to users in the MBRC home directories, project directories and scratch directories.
Home Directories
Home directories in the MBRC computational infrastructure are available from the Institutes NFShomes as /nfshomes/USERNAME
where USERNAME is your username. These home directories have very limited storage and are intended for your personal files, configuration and source code. Your home directory is not intended for data sets or other large scale data holdings. Users are encouraged to utilize our GitLab infrastructure to host your code repositories.
NOTE: To check your quota on this directory you will need to use the quota -s
command.
Your home directory data is fully protected and has both snapshots and is backed up nightly.