Cbcb:Pop-Lab: Difference between revisions
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* How-tos: [[Cbcb:Pop-Lab:How-to]] - List of documentation on how to perform certain analyses, use different software, etc. | * How-tos: [[Cbcb:Pop-Lab:How-to]] - List of documentation on how to perform certain analyses, use different software, etc. | ||
* Software developed by us: [[Cbcb:Pop-Lab:Software]] | * Software developed by us: [[Cbcb:Pop-Lab:Software]] | ||
* Metagenomics papers: [[Cbcb:Pop-Lab:Papers]] | |||
* TODO items (please volunteer to take some of these on): [[Cbcb:Pop-Lab:TODO]] | |||
* Grand Challenges: [[Cbcb:Pop-Lab:Challenges]] - research challenges | |||
= Tutorials/Documenation = | |||
BWT 2011 (Bioinformatics Whirwind Tour 2011) | |||
Format: 1 hour lectures, informal, theory + tools. | |||
''June 27th - July 1st'' | |||
* [http://cbcb.umd.edu/data/assembly_lecture.pptx Intro to NGS Genome Assembly] (Sergey & Todd, Monday @ 12:30pm) | |||
* [http://cbcb.umd.edu/data/stats_intern.pptx Intro to Statistics] (Joe, Tuesday @ noon ) | |||
* Intro to Sequence Alignment (Mohammad, Wednesday @ 4pm) | |||
* Intro to Gene/motif/pattern finding (Dan & Bo, Thursday @ 1:30pm) | |||
* Intro to Clustering (Irina, Friday @ ) | |||
= Meetings/seminars = | = Meetings/seminars = | ||
* [[Pop_group_meeting|Group meeting]]: every Monday from 2:30pm in corner conference room (3120 C) | * [[Pop_group_meeting|Group meeting]]: every Monday from 2:30pm in corner conference room (3120 C) | ||
* [[seminars|CBCB seminar]]: Thursdays 2-3pm during the semester in main conference room | * [[seminars|CBCB seminar]]: Thursdays 2-3pm during the semester in main conference room | ||
* [[Summer_Reading_Group_2009|Summer Reading Group 2009 (Computational Metabolic Pathway Analysis)]]: Fridays from 2ish-5ish in 3120C in the SE corner of the Bioscience Research Building (BSB) from June 5-August 28 | |||
= Progress Reports = | = Progress Reports = | ||
* [[Cbcb:Pop-Lab:Ben-Report|Ben]] | * [[Cbcb:Pop-Lab:Ben-Report|Ben]] | ||
* [[Cbcb:Pop-Lab:Chris-Report|Chris]] | * [[Cbcb:Pop-Lab:Chris-Report|Chris]] | ||
* [[Cbcb:Pop-Lab:James-Report|James]] | * [[Cbcb:Pop-Lab:James-Report|James]] | ||
* [[Cbcb:Pop-Lab:Serge-Report|Serge]] | * [[Cbcb:Pop-Lab:Serge-Report|Serge]] | ||
* [[Cbcb:Pop-Lab:Bo-Report|Bo]] | |||
* [[Cbcb:Pop-Lab:Dan-Report|Dan]] | |||
* [[Cbcb:Pop-Lab:Mohammad-Report|Mohammad]] | |||
* [[Cbcb:Pop-Lab:Ted-Report|Ted]] | |||
= Pop Lab Presentations = | = Pop Lab Presentations = | ||
Latest revision as of 02:46, 30 June 2011
Important pages
- Group members Cbcb:Pop-Lab:Members
- Blog: Genomes.blogspot.com
- How-tos: Cbcb:Pop-Lab:How-to - List of documentation on how to perform certain analyses, use different software, etc.
- Software developed by us: Cbcb:Pop-Lab:Software
- Metagenomics papers: Cbcb:Pop-Lab:Papers
- TODO items (please volunteer to take some of these on): Cbcb:Pop-Lab:TODO
- Grand Challenges: Cbcb:Pop-Lab:Challenges - research challenges
Tutorials/Documenation
BWT 2011 (Bioinformatics Whirwind Tour 2011) Format: 1 hour lectures, informal, theory + tools. June 27th - July 1st
- Intro to NGS Genome Assembly (Sergey & Todd, Monday @ 12:30pm)
- Intro to Statistics (Joe, Tuesday @ noon )
- Intro to Sequence Alignment (Mohammad, Wednesday @ 4pm)
- Intro to Gene/motif/pattern finding (Dan & Bo, Thursday @ 1:30pm)
- Intro to Clustering (Irina, Friday @ )
Meetings/seminars
- Group meeting: every Monday from 2:30pm in corner conference room (3120 C)
- CBCB seminar: Thursdays 2-3pm during the semester in main conference room
- Summer Reading Group 2009 (Computational Metabolic Pathway Analysis): Fridays from 2ish-5ish in 3120C in the SE corner of the Bioscience Research Building (BSB) from June 5-August 28
Progress Reports
Pop Lab Presentations
- Xanthomonas Crispr Slides (openoffice format)
- Listeria Monocytogenes Slides (powerpoint)
- Metagenome pipelines overview Presentation(pdf)