User:Dpuiu: Difference between revisions
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Daniela Puiu's page | Daniela Puiu's page | ||
= NCBI = | = NCBI = | ||
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* [http://www.sanger.ac.uk/ Sanger] | * [http://www.sanger.ac.uk/ Sanger] | ||
* [http://www.sanger.ac.uk/Projects/Microbes/ Sanger Microbial Genomes] | * [http://www.sanger.ac.uk/Projects/Microbes/ Sanger Microbial Genomes] | ||
* [http://www.thearkdb.org/arkdb/index.jsp ARKDB] genetic maps - cow, chicken ... | * [http://www.thearkdb.org/arkdb/index.jsp ARKDB] genetic maps - cow, chicken ... | ||
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* [[Yersinia_pestis|Yersinia pestis]] | * [[Yersinia_pestis|Yersinia pestis]] | ||
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'''Other genomes''' | '''Other genomes''' | ||
* [[Bumblebee|Bombus impatiens]] | |||
* [[Brugia_malayi|Brugia malayi]] | * [[Brugia_malayi|Brugia malayi]] | ||
* [[Bos_taurus|Bos taurus]] , [[Bos_taurus_redo|Bos taurus redo]] , [[Bos_taurus_3.0|Bos taurus 3.0]] | * [[Bos_taurus|Bos taurus]] , [[Bos_taurus_redo|Bos taurus redo]] , [[Bos_taurus_3.0|Bos taurus 3.0]] | ||
* [[dpuiu_cat|Cat]] | |||
* [[Coffee_bacs|Coffee BACs]] | * [[Coffee_bacs|Coffee BACs]] | ||
* [[Culex_pipiens_symbiont|Culex pipiens wolbachia symbiont]] | * [[Culex_pipiens_symbiont|Culex pipiens wolbachia symbiont]] | ||
| Line 56: | Line 49: | ||
* [[Helicobacter_pylori|Helicobacter pylori]] | * [[Helicobacter_pylori|Helicobacter pylori]] | ||
* [[Homo_sapiens|Homo sapiens]] | * [[Homo_sapiens|Homo sapiens]] | ||
* [[Kalanchoe|Kalanchoe]] | |||
* [[Megachile_rotundata|Megachile rotundata]] | |||
* [[Methanobrevibacter_smithii|Methanobrevibacter smithii]] | * [[Methanobrevibacter_smithii|Methanobrevibacter smithii]] | ||
* [[Pine_tree|Pine tree]] | |||
* [[Pseudomonas_aeruginosa|Pseudomonas aeruginosa]] | * [[Pseudomonas_aeruginosa|Pseudomonas aeruginosa]] | ||
* [[Pseudodomonas_syringae|Pseudomonas syringae]] | * [[Pseudodomonas_syringae|Pseudomonas syringae]] | ||
* [[Sea_urchin|Sea urchin]] | * [[Sea_urchin|Sea urchin]] | ||
* [[Turkey|Turkey]] | * [[Turkey|Turkey]] | ||
* [[Xanthomonas_oryzae|Xanthomonas oryzae]] | * [[Xanthomonas_oryzae|Xanthomonas oryzae]] XOO | ||
* [[Xanthomonas_campestris_pv_raphani|Xanthomonas campestris pv. raphani]] XCR | |||
* [[Strawberry|Strawberry]] | * [[Strawberry|Strawberry]] | ||
* [[Ecoli_germany|Ecoli Germany]] | |||
--> | |||
= Other = | = Other = | ||
* [[Trace_formatting|Sequencing]] | * [[Trace_formatting|Sequencing]] | ||
* [[dpuiu_CA|CA]] ; [[Assembly_merge|Assembly]] | * [[dpuiu_CA|CA]] ; [[Assembly_merge|Assembly]] | ||
* [[Comparative_assemblies|Comparative assemblies]] | * [[Comparative_assemblies|Comparative assemblies]] | ||
| Line 74: | Line 72: | ||
* [[Vector_trimming|Vector trimming]] | * [[Vector_trimming|Vector trimming]] | ||
* [[Data_formats|Data formats]] | * [[Data_formats|Data formats]] | ||
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* [[dpuiu_Assemblathon|Assemblathon]] | |||
* [[dpuiu_HTS|HTS]] | |||
* [[dpuiu_definitions|Definitions]] | * [[dpuiu_definitions|Definitions]] | ||
* [[dpuiu_meeting_notes|Meeting notes]] | * [[dpuiu_meeting_notes|Meeting notes]] | ||
* [[dpuiu_articles|My articles]] | * [[dpuiu_articles|My articles]] | ||
* [[dpuiu_CS|CS]] ; [[dpuiu_Perl|Perl]] ; [[dpuiu_C|C]] ; [[dpuiu_Linux|Linux]] ; [[dpuiu_DOS|DOS]] ; [[douiu_wiki|wiki]] | * [[dpuiu_CS|CS]] ; [[dpuiu_Perl|Perl]] ; [[dpuiu_C|C]] ; [[dpuiu_Linux|Linux]] ; [[dpuiu_DOS|DOS]] ; [[douiu_wiki|wiki]] ; [[dpuiu_thunderbird|thunderbird]] | ||
* [[Pop_group_meeting|Pop group meeting]] (Monday 's 3pm) | * [[Pop_group_meeting|Pop group meeting]] (Monday 's 3pm) | ||
* [[dpuiu_snp|Snp calling]] | |||
* [[dpuiu_todo|ToDo]] | * [[dpuiu_todo|ToDo]] | ||
* [[dpuiu_JHU|JHU]] | |||
--> | |||
* | |||
Latest revision as of 15:34, 27 December 2011
Daniela Puiu's page
NCBI
- NCBI ; AA ; BLAST ; Microbial_Genomes ; SRA SRA_FTP ; TA ; TA_FTP ; Genomes_FTP ; Bacterial Genomes FTP ; Taxonomy CommonTree
- Complete Bacteria
Links
- Baylor
- EMBL
- EMBOSS
- Homo Sapiens Genome Projects
- JGI Microbial Genomes
- JGI Genomes Online (GOLD)
- JGI Integrated Microbial Genomes (IMG)
- Sanger
- Sanger Microbial Genomes
- ARKDB genetic maps - cow, chicken ...
Projects
DHS genomes
- Bioterrorism
- Bacillus anthracis
- Burkholderia mallei
- Burkholderia pseudomallei
- Clostridium botulinum (Hall strain A str. ATCC 3502) ; uploaded to Insignia ; (other) ; some uploaded to Insignia
- Clostridium perfringens ; some uploaded to Insignia
- Cryptosporidium hominis (test)
- Francisella tularensis OSU18 in Insignia
- Francisella tularensis some uploaded to Insignia
- Salmonella (Washington Univ in St Louis)
- Yersinia enterocolitica
- Yersinia pestis