User:Dpuiu

Daniela Puiu's page

NCBI:

• NCBI
• AA
• BLAST
• Microbial Genomes
• SRA
• SRA FTP
• TA
• TA FTP

Other links:

• Baylor
• EMBL
• EMBOSS
• Homo Sapiens Genome Projects
• JGI Microbial Genomes
• JGI Genomes Online (GOLD)
• JGI Integrated Microbial Genomes (IMG)
• Sanger
• Sanger Microbial Genomes
• CBCB NCBI complete genomes: /fs/szdata//ncbi/genomes/Bacteria/ (*.fna)

Projects:

DHS genomes

• Bioterrorism

• Bacillus anthracis
• Burkholderia mallei
• Burkholderia pseudomallei
• Clostridium botulinum (Hall strain A str. ATCC 3502) ; uploaded to Insignia
• Clostridium botulinum (other) ; some uploaded to Insignia
• Clostridium perfringens ; some uploaded to Insignia
• Cryptosporidium hominis (test)
• Francisella tularensis ; some uploaded to Insignia
• Salmonella (Washington Univ in St Louis)
• Salmonella (other)
• Yersinia enterocolitica
• Yersinia pestis

Other genomes

• Brugia malayi
• Coffee BACs
• Culex pipiens wolbachia symbiont
• Culex pipiens wolbachia mitochondrion
• Homo sapiens
• Pseudomonas aeruginosa
• Pseudomonas syringae
• Sea urchin
• Xanthomonas oryzae

Other projects

• Assembly merge
• Comparative assemblies
• Metagenomics
• NCBI submission
• Sequence manipulation
• Short read sequencing (Friday's 3pm meeting)