Cbcb:Pop-Lab: Difference between revisions

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== Important pages ==
= Important pages =
Group members [[Cbcb:Pop-Lab:Members]] <br>
* Group members [[Cbcb:Pop-Lab:Members]]  
Blog: [http://genomes.blogspot.com Genomes.blogspot.com] <br>
* Blog: [http://genomes.blogspot.com Genomes.blogspot.com]
How-tos: [[Cbcb:Pop-Lab:How-to]] - List of documentation on how to perform certain analyses, use different software, etc. <br>
* How-tos: [[Cbcb:Pop-Lab:How-to]] - List of documentation on how to perform certain analyses, use different software, etc.
Software developed by us: [[Cbcb:Pop-Lab:Software]]
* Software developed by us: [[Cbcb:Pop-Lab:Software]]
* Metagenomics papers: [[Cbcb:Pop-Lab:Papers]]
* TODO items (please volunteer to take some of these on): [[Cbcb:Pop-Lab:TODO]]
* Grand Challenges: [[Cbcb:Pop-Lab:Challenges]] - research challenges


== Meetings/seminars ==
= Tutorials/Documenation =
'''Group meeting''': *every* Thursday 3-4pm in corner conference room (3120 C) <BR>
BWT 2011 (Bioinformatics Whirwind Tour 2011)
'''CBCB works-in-progress seminar''': Mondays 1:30-2:30pm during the summer in main conference room <BR>
Format: 1 hour lectures, informal, theory + tools.
[http://www.cbcb.umd.edu/seminars '''CBCB seminar''']: Thursdays 2-3pm during the semester in main conference room <BR>
''June 27th - July 1st''


== Pop Lab Presentations ==
* [http://cbcb.umd.edu/data/assembly_lecture.pptx Intro to NGS Genome Assembly] (Sergey & Todd, Monday @ 12:30pm)
Xanthomonas Crispr Slides (openoffice format)  
* [http://cbcb.umd.edu/data/stats_intern.pptx Intro to Statistics] (Joe, Tuesday @ noon )
[[Media:Xoo_Cripsr.odg]]
* Intro to Sequence Alignment (Mohammad, Wednesday @ 4pm)
* Intro to Gene/motif/pattern finding (Dan & Bo, Thursday @ 1:30pm)
* Intro to Clustering (Irina, Friday @ )


Listeria Monocytogenes Slides (powerpoint)
= Meetings/seminars =
[[Slides]]
* [[Pop_group_meeting|Group meeting]]: every Monday from 2:30pm in corner conference room (3120 C)
* [[seminars|CBCB seminar]]: Thursdays 2-3pm during the semester in main conference room
* [[Summer_Reading_Group_2009|Summer Reading Group 2009 (Computational Metabolic Pathway Analysis)]]: Fridays from 2ish-5ish in 3120C in the SE corner of the Bioscience Research Building (BSB) from June 5-August 28
 
= Progress Reports =
* [[Cbcb:Pop-Lab:Ben-Report|Ben]]
* [[Cbcb:Pop-Lab:Chris-Report|Chris]]
* [[Cbcb:Pop-Lab:James-Report|James]]
* [[Cbcb:Pop-Lab:Serge-Report|Serge]]
* [[Cbcb:Pop-Lab:Bo-Report|Bo]]
* [[Cbcb:Pop-Lab:Dan-Report|Dan]]
* [[Cbcb:Pop-Lab:Mohammad-Report|Mohammad]]
* [[Cbcb:Pop-Lab:Ted-Report|Ted]]
 
= Pop Lab Presentations =
* [[Media:Xoo_Cripsr.odg|Xanthomonas Crispr Slides (openoffice format)]]
* Listeria Monocytogenes Slides (powerpoint)
* Metagenome pipelines overview [[Media:Pipeline_outline.pdf|Presentation(pdf)]]

Latest revision as of 02:46, 30 June 2011

Important pages

Tutorials/Documenation

BWT 2011 (Bioinformatics Whirwind Tour 2011) Format: 1 hour lectures, informal, theory + tools. June 27th - July 1st

  • Intro to NGS Genome Assembly (Sergey & Todd, Monday @ 12:30pm)
  • Intro to Statistics (Joe, Tuesday @ noon )
  • Intro to Sequence Alignment (Mohammad, Wednesday @ 4pm)
  • Intro to Gene/motif/pattern finding (Dan & Bo, Thursday @ 1:30pm)
  • Intro to Clustering (Irina, Friday @ )

Meetings/seminars

Progress Reports

Pop Lab Presentations