Francisella tularensis

Data Sources

NCBI:

• Genome Projects
• SRA BCM
• TA
• TA FTP
• TA OUS18

Broad:

• MSC
• Data Download

Baylor:

• Microbial Genomes
• FTP

JGI:

• Comparative analysis

Read Counts

• Francisella_tularensis.pdf
• Francisella_tularensis.sxc

Type A

• SCHU_S4 SDRA , Complete (1,892,819 bp)
• FSC033 Broad, Assembly (15 contigs) ***
• ATCC6223 Baylor (88 contigs) ***

Type B

• OSU18 Baylor, Complete (1,895,727 bp) ***
• KO97 Baylor (126 contigs) ***
• MI001730 Baylor (118 contigs) ***
• OR960246 Baylor (111 contigs) ***
• RC503 Baylor (115 contigs)
• 275 Broad (31 contigs) ***
• FSC022 Broad (19 contigs) ***

Novicida

• U112 Univ. of Washington, Complete 1,910,031 bp
• GA99-3548 Broad (18 contigs) ***
• GA99-3549 Broad (15 contigs) ***

File Locations on Disk

• /fs/szdata//ncbi/genomes/Bacteria/Francisella_tularensis
• ~dpuiu/Data/F_tularensis/
• /fs/szasmg/Bacteria/F_tularensis

454

Paired End reads:

 * approximately 84-nucleotide DNA fragments 
 * have a 44-mer adaptor sequence in the middle 
 * flanked by a 20-mer sequence on each side. 
 * The two flanking 20-mers are segments of DNA that were originally located approximately 2.5 kb apart in the genome of interest.  
 * The ordering and orienting of contigs generates scaffolds which provide a high-quality draft sequence of the genome.
 pair read article