User:Dpuiu: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
|||
| Line 1: | Line 1: | ||
Daniela Puiu's page | Daniela Puiu's page | ||
= NCBI = | |||
* [http://www.ncbi.nlm.nih.gov/ NCBI] | * [http://www.ncbi.nlm.nih.gov/ NCBI] | ||
| Line 12: | Line 12: | ||
* [ftp://ftp.ncbi.nih.gov/pub/TraceDB/ TA FTP] | * [ftp://ftp.ncbi.nih.gov/pub/TraceDB/ TA FTP] | ||
= | = Links = | ||
* [http://www.hgsc.bcm.tmc.edu/ Baylor] | * [http://www.hgsc.bcm.tmc.edu/ Baylor] | ||
| Line 25: | Line 25: | ||
* CBCB NCBI complete genomes: /fs/szdata//ncbi/genomes/Bacteria/ (*.fna) | * CBCB NCBI complete genomes: /fs/szdata//ncbi/genomes/Bacteria/ (*.fna) | ||
= Projects = | |||
'''DHS genomes''' | |||
* [[Bioterrorism|Bioterrorism]] | * [[Bioterrorism|Bioterrorism]] | ||
* [[Bacillus_anthracis|Bacillus anthracis]] | * [[Bacillus_anthracis|Bacillus anthracis]] | ||
* [[Burkholderia_mallei|Burkholderia mallei]] | * [[Burkholderia_mallei|Burkholderia mallei]] | ||
| Line 44: | Line 43: | ||
* [[Yersinia_pestis|Yersinia pestis]] | * [[Yersinia_pestis|Yersinia pestis]] | ||
'''Other genomes''' | |||
* [[Brugia_malayi|Brugia malayi]] | * [[Brugia_malayi|Brugia malayi]] | ||
* [[Coffee_bacs|Coffee BACs]] | * [[Coffee_bacs|Coffee BACs]] | ||
| Line 55: | Line 54: | ||
* [[Xanthomonas_oryzae|Xanthomonas oryzae]] | * [[Xanthomonas_oryzae|Xanthomonas oryzae]] | ||
= Other projects = | |||
* [[Assembly_merge|Assembly]] | * [[Assembly_merge|Assembly]] | ||
* [[Comparative_assemblies|Comparative assemblies]] | * [[Comparative_assemblies|Comparative assemblies]] | ||
| Line 63: | Line 61: | ||
* [[Trace_formatting|Sequence manipulation]]\ | * [[Trace_formatting|Sequence manipulation]]\ | ||
== | = Meetings = | ||
* [[Short_read_sequencing|Short read sequencing]] (Friday's 3pm meeting) | * [[Short_read_sequencing|Short read sequencing]] (Friday's 3pm meeting) | ||
* [[Monday_3pm_meeting| | * [[Pop_group_meeting|Pop group meeting]], [[Monday_3pm_meeting|my notes]] | ||
* [[dpuiu_meeting_notes|Meeting notes]] | * [[dpuiu_meeting_notes|Meeting notes]] | ||
Revision as of 13:07, 8 October 2008
Daniela Puiu's page
NCBI
Links
- Baylor
- EMBL
- EMBOSS
- Homo Sapiens Genome Projects
- JGI Microbial Genomes
- JGI Genomes Online (GOLD)
- JGI Integrated Microbial Genomes (IMG)
- Sanger
- Sanger Microbial Genomes
- CBCB NCBI complete genomes: /fs/szdata//ncbi/genomes/Bacteria/ (*.fna)
Projects
DHS genomes
- Bioterrorism
- Bacillus anthracis
- Burkholderia mallei
- Burkholderia pseudomallei
- Clostridium botulinum (Hall strain A str. ATCC 3502) ; uploaded to Insignia
- Clostridium botulinum (other) ; some uploaded to Insignia
- Clostridium perfringens ; some uploaded to Insignia
- Cryptosporidium hominis (test)
- Francisella tularensis OSU18 in Insignia
- Francisella tularensis some uploaded to Insignia
- Salmonella (Washington Univ in St Louis)
- Salmonella (other)
- Yersinia enterocolitica
- Yersinia pestis
Other genomes
- Brugia malayi
- Coffee BACs
- Culex pipiens wolbachia symbiont
- Culex pipiens wolbachia mitochondrion
- Homo sapiens
- Pseudomonas aeruginosa
- Pseudomonas syringae
- Sea urchin
- Xanthomonas oryzae
Other projects
Meetings
- Short read sequencing (Friday's 3pm meeting)
- Pop group meeting, my notes
- Meeting notes