User:Dpuiu: Difference between revisions
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= NCBI = | = NCBI = | ||
* [http://www.ncbi.nlm.nih.gov/ NCBI] ; [http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi?cmd=browse&f=&m=main&s=browse AA] ; [http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=on&BLAST_PROGRAMS=megaBlast&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on BLAST] ; [http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi Microbial_Genomes] ; [http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi? SRA] [ftp://ftp.ncbi.nih.gov/pub/TraceDB/ShortRead/ SRA_FTP] ; [http://www.ncbi.nlm.nih.gov/Traces/trace.cgi? TA] ; [ftp://ftp.ncbi.nih.gov/pub/TraceDB/ TA_FTP] | * [http://www.ncbi.nlm.nih.gov/ NCBI] ; [http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi?cmd=browse&f=&m=main&s=browse AA] ; [http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=on&BLAST_PROGRAMS=megaBlast&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on BLAST] ; [http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi Microbial_Genomes] ; [http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi? SRA] [ftp://ftp.ncbi.nih.gov/pub/TraceDB/ShortRead/ SRA_FTP] ; [http://www.ncbi.nlm.nih.gov/Traces/trace.cgi? TA] ; [ftp://ftp.ncbi.nih.gov/pub/TraceDB/ TA_FTP] ; [ftp://ftp.ncbi.nih.gov/genomes/ Genomes_FTP] ; [ftp://ftp.ncbi.nih.gov/genomes/Bacteria Complete Bacterial Genomes FTP] | ||
= Links = | = Links = | ||
Revision as of 16:18, 21 October 2008
Daniela Puiu's page
Bookmarks
NCBI
- NCBI ; AA ; BLAST ; Microbial_Genomes ; SRA SRA_FTP ; TA ; TA_FTP ; Genomes_FTP ; Complete Bacterial Genomes FTP
Links
- Baylor
- EMBL
- EMBOSS
- Homo Sapiens Genome Projects
- JGI Microbial Genomes
- JGI Genomes Online (GOLD)
- JGI Integrated Microbial Genomes (IMG)
- Sanger
- Sanger Microbial Genomes
- CBCB NCBI complete genomes: /fs/szdata//ncbi/genomes/Bacteria/ (*.fna)
Projects
DHS genomes
- Bioterrorism
- Bacillus anthracis
- Burkholderia mallei
- Burkholderia pseudomallei
- Clostridium botulinum (Hall strain A str. ATCC 3502) ; uploaded to Insignia
- Clostridium botulinum (other) ; some uploaded to Insignia
- Clostridium perfringens ; some uploaded to Insignia
- Cryptosporidium hominis (test)
- Francisella tularensis OSU18 in Insignia
- Francisella tularensis some uploaded to Insignia
- Salmonella (Washington Univ in St Louis)
- Salmonella (other)
- Yersinia enterocolitica
- Yersinia pestis
Other genomes
- Brugia malayi
- Coffee BACs
- Culex pipiens wolbachia symbiont
- Culex pipiens wolbachia mitochondrion
- Homo sapiens
- Pseudomonas aeruginosa
- Pseudomonas syringae
- Sea urchin
- Xanthomonas oryzae
Other projects
Meetings
- Short read sequencing (Friday's 3pm)
- Pop group meeting (Monday 's 3pm)
- Definitions
- Meeting notes
- My articles