User:Dpuiu

Daniela Puiu's page

Bookmarks

NCBI_submission wPip Definitions Perl Pop group meeting

NCBI

• NCBI ; AA ; BLAST ; Microbial_Genomes ; SRA SRA_FTP ; TA ; TA_FTP ; Genomes_FTP ; Bacterial Genomes FTP ; Taxonomy CommonTree

Links

• Baylor
• EMBL
• EMBOSS
• Homo Sapiens Genome Projects
• JGI Microbial Genomes
• JGI Genomes Online (GOLD)
• JGI Integrated Microbial Genomes (IMG)
• Sanger
• Sanger Microbial Genomes
• CBCB NCBI complete genomes: /fs/szdata//ncbi/genomes/Bacteria/ (*.fna)

Projects

DHS genomes

• Bioterrorism
• Bacillus anthracis
• Burkholderia mallei
• Burkholderia pseudomallei
• Clostridium botulinum (Hall strain A str. ATCC 3502) ; uploaded to Insignia
• Clostridium botulinum (other) ; some uploaded to Insignia
• Clostridium perfringens ; some uploaded to Insignia
• Cryptosporidium hominis (test)
• Francisella tularensis OSU18 in Insignia
• Francisella tularensis some uploaded to Insignia
• Salmonella (Washington Univ in St Louis)
• Salmonella (other)
• Yersinia enterocolitica
• Yersinia pestis

Other genomes

• Brugia malayi
• Coffee BACs
• Culex pipiens wolbachia symbiont
• Culex pipiens wolbachia mitochondrion
• Homo sapiens
• Pseudomonas aeruginosa
• Pseudomonas syringae
• Sea urchin
• Xanthomonas oryzae

Other

• Assembly
• Comparative assemblies
• Metagenomics
• NCBI submission
• Repeat search
• Sequence manipulation

• Definitions
• Meeting notes
• My articles
• Perl ; C ; Linux
• Pop group meeting (Monday 's 3pm)
• Short read sequencing (Friday's 3pm)