User:Dpuiu: Difference between revisions
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* [[dpuiu_CS|CS]] ; [[dpuiu_Perl|Perl]] ; [[dpuiu_C|C]] ; [[dpuiu_Linux|Linux]] ; [[dpuiu_DOS|DOS]] ; [[douiu_wiki|wiki]] | * [[dpuiu_CS|CS]] ; [[dpuiu_Perl|Perl]] ; [[dpuiu_C|C]] ; [[dpuiu_Linux|Linux]] ; [[dpuiu_DOS|DOS]] ; [[douiu_wiki|wiki]] | ||
* [[Pop_group_meeting|Pop group meeting]] (Monday 's 3pm) | * [[Pop_group_meeting|Pop group meeting]] (Monday 's 3pm) | ||
= ToDo = | |||
* Fix AMOScmp-shortReads* links (don't redirect to SF) | |||
http://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOScmp-shortReads | |||
* Update web sites | |||
* fasta2amos script | |||
Revision as of 20:29, 21 September 2009
Daniela Puiu's page
Bookmarks
NCBIsub ; wPip ; Definitions ; Pop ; Perl ; C ; Linux
NCBI
- NCBI ; AA ; BLAST ; Microbial_Genomes ; SRA SRA_FTP ; TA ; TA_FTP ; Genomes_FTP ; Bacterial Genomes FTP ; Taxonomy CommonTree
- Complete Bacteria
Links
- Baylor
- EMBL
- EMBOSS
- Homo Sapiens Genome Projects
- JGI Microbial Genomes
- JGI Genomes Online (GOLD)
- JGI Integrated Microbial Genomes (IMG)
- Sanger
- Sanger Microbial Genomes
- CBCB
- NCBI complete genomes: /fs/szdata//ncbi/genomes/Bacteria/ (*.fna)
- Personal web site http://www.cbcb.umd.edu/~dpuiu -> /fs/www/users/dpuiu/
- Personal ftp site ftp://ftp.cbcb.umd.edu/pub/data/dpuiu -> /fs/ftp-cbcb/pub/data/dpuiu/
Projects
DHS genomes
- Bioterrorism
- Bacillus anthracis
- Burkholderia mallei
- Burkholderia pseudomallei
- Clostridium botulinum (Hall strain A str. ATCC 3502) ; uploaded to Insignia ; (other) ; some uploaded to Insignia
- Clostridium perfringens ; some uploaded to Insignia
- Cryptosporidium hominis (test)
- Francisella tularensis OSU18 in Insignia
- Francisella tularensis some uploaded to Insignia
- Salmonella (Washington Univ in St Louis)
- Yersinia enterocolitica
- Yersinia pestis
Other genomes
- Brugia malayi
- Bos taurus , Bos taurus redo , Bos taurus 3.0
- Coffee BACs
- Culex pipiens wolbachia symbiont
- Culex pipiens wolbachia mitochondrion
- Homo sapiens
- Pseudomonas aeruginosa
- Pseudomonas syringae
- Sea urchin
- Xanthomonas oryzae
Other
- Sequencing
- CA ; Assembly
- Comparative assemblies
- Metagenomics
- NCBI submission
- Repeat search
- Vector trimming
- Definitions
- Meeting notes
- My articles
- CS ; Perl ; C ; Linux ; DOS ; wiki
- Pop group meeting (Monday 's 3pm)
ToDo
- Fix AMOScmp-shortReads* links (don't redirect to SF)
http://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOScmp-shortReads
- Update web sites
- fasta2amos script